Bacillus smithii: BSM4216_1608
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Entry
BSM4216_1608 CDS
T03984
Name
(GenBank) RNA polymerase sigma factor for flagellar operon
KO
K02405
RNA polymerase sigma factor FliA
Organism
bsm
Bacillus smithii
Pathway
bsm02020
Two-component system
bsm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bsm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BSM4216_1608
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BSM4216_1608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsm03021
]
BSM4216_1608
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
bsm02035
]
BSM4216_1608
Transcription machinery [BR:
bsm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BSM4216_1608
Bacterial motility proteins [BR:
bsm02035
]
Flagellar system
Flagellar assembly proteins
Stator
BSM4216_1608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
MerR-DNA-bind
UPF0122
UPF0175
DUF2316
HTH_23
HTH_5
MarR_2
GerE
DUF1492
DUF2284
TFIIE_alpha
Phage_hub_GP28
Motif
Other DBs
NCBI-ProteinID:
AKP46889
UniProt:
A0A0H4NZ98
LinkDB
All DBs
Position
1:1398707..1399489
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AA seq
260 aa
AA seq
DB search
MIDVQLVEEKKWWDLWLTSRDPDAGDLLVKRYTPLVSYHVQRLSVHMPKNVSRDELKSLG
FLGLVDALTKFDPSRDLKFDTYASFRIRGAILDGLRKEDWLPRGTREKAKKIEAKIEELE
QQFLRHVTAEEVANELDMSVEELQQIMAEYYTANILSMDDQIKDQEEMDGKGYDIKDDRI
STPEEEVVKEELIQELSREIAGLSEKEKLVLSLFYQEELTLTEIGEILNLSTSRISQIHS
KALFKLRNKLKKVSGIPFRC
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgatagatgtacaacttgtagaggagaaaaaatggtgggatttatggcttacatcaaga
gatccggacgccggggatttgcttgtcaaacgatatactccgcttgtcagttatcatgtt
cagcgcctctctgttcacatgccgaaaaatgtaagccgggatgaactcaaaagcctcgga
tttttaggcttggtggatgcgttgacaaaatttgatccgtccagagatttaaagtttgat
acatacgcttcttttcgtattagaggagcaatattagatgggctcagaaaagaggactgg
cttccaagagggacgagggaaaaagcgaaaaaaatcgaagccaaaatcgaagaattagag
cagcaatttttaagacatgtcacggcggaagaagtcgcaaacgaactagacatgagcgta
gaggaacttcaacaaatcatggctgaatattatacggccaacatattatcgatggacgat
caaataaaagatcaagaggaaatggatggaaaaggctacgatatcaaagatgaccgaatc
tctactcctgaagaagaggttgtcaaagaggagttaatccaagagttatcccgtgaaata
gcgggattgtctgagaaagaaaaattagtgctgagcctattttatcaggaggagttaaca
ttgactgaaattggagagattctgaatctttccacttcacgaatttcacagatccattcg
aaagctctttttaaattgcggaacaagctaaaaaaagtcagcggcatcccttttcgctgc
taa
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