Bacillus smithii: BSM4216_2198
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Entry
BSM4216_2198 CDS
T03984
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsm
Bacillus smithii
Pathway
bsm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BSM4216_2198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsm03400
]
BSM4216_2198
Enzymes [BR:
bsm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BSM4216_2198
DNA repair and recombination proteins [BR:
bsm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BSM4216_2198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_A_C
Med3
Motif
Other DBs
NCBI-ProteinID:
AKP47443
UniProt:
A0A0H4P4S4
LinkDB
All DBs
Position
1:1938726..1940549
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AA seq
607 aa
AA seq
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MQFMMPELKMTFPEKGNWLFETKYDGFRAQLIWTKETVQLLSRNGQNILPLFPEIKNFLK
PFQKKASSFLPLVFDGELAALQSEGKSNFSVVQIRGRMRSPSKIAEKASFFPCTYLVFDL
LEIKGQSIKSQPFEKRKEQLYRVFESFGWSLSPKPSAESRIQMIPSFRELSTLKDFVSLH
FGEGIVAKKQDSIWEGKRSGNWIKIKNWKKARCFVTAFHEANGYYNIAVYKDKNIFPIGL
FQAGIPKKEKEALNQIIRQNAFEKKEDVYYIKPGICVELFYLEWQKEGLREPYFHQFLFS
TTPEECTWEQFRLDSLHIPEQVEITHPLKPIWPACGYTKLDYLSYLRKTAPRMLPFLKDR
ALTVIRYPHGVEDEAFFQKNCPDYAPDFVETKKMDGINYIVCNSLETLIWLGNQLAIEFH
VPFHSIHSSYVSEIVFDLDPPSPKEFSLAVQAAKDMKEIFDQLNLKTFVKFSGNKGLQVY
IPLPETFTFAETGSFTELIARYLVSKKPEMFTIERLKKKRGRRLYIDYVQYRQGKTIIAP
YSARGNEKGLVACPLYWEELDQFTPSQCTIDWVLKRMETTLCPFASFFEAKVDQPFAEII
NALPQLD
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgcaattcatgatgcctgaactaaaaatgacttttcccgaaaaaggcaactggcttttt
gaaacaaaatatgatggctttcgcgcccaattaatatggacgaaagaaaccgttcagctt
ctcagtcgtaacggccaaaatattttgcccttatttcctgaaatcaaaaattttttgaag
ccgtttcaaaaaaaggcttcttcatttttgccactcgtgttcgatggggaattggccgca
ttacaatcggagggtaaatccaatttttctgtcgtgcaaataagaggtcgaatgcggtcc
ccttctaaaatagcggaaaaagcatcctttttcccttgtacatatctcgtttttgatcta
ttggaaataaaaggacaatccataaaaagccaaccttttgaaaaacggaaagaacaactt
tatcgagtattcgaatctttcggttggagcttgtctccgaaaccttctgccgaatcgaga
attcaaatgataccatcattccgtgaattgtcgaccttaaaagattttgtatctctccat
tttggagaaggaattgtagcaaaaaaacaggattctatatgggaaggaaaaaggtccgga
aactggatcaaaatcaaaaactggaagaaagcccgttgcttcgtgacggcttttcatgaa
gcgaacggctactataatatagctgtttacaaggataaaaacatttttcctatcggcctt
tttcaagcgggaattccgaaaaaagaaaaagaagccttaaatcaaattattcgtcaaaat
gcttttgaaaaaaaagaagacgtatattatataaagccagggatttgtgtagagttattt
tatttagagtggcaaaaagagggcttgagagaaccttattttcatcaatttttattttcc
accacacctgaggaatgtacatgggaacaatttcgccttgatagcctccatattcctgag
caagtggagatcacccacccattaaaacccatatggcctgcttgcggttatacaaaactc
gattacctttcctacttgcggaaaacggctccaagaatgctccctttcttaaaggataga
gcattaacggtgatccgatatccacatggagtagaggacgaagctttttttcaaaaaaac
tgcccggactatgcaccggattttgtcgaaacgaagaaaatggacggaatcaattatatt
gtttgcaattccctggaaacactgatttggctcggcaatcaattggccattgaatttcat
gtcccctttcattccatccattcctcctatgtcagcgaaattgtttttgatctggaccct
cctagtccaaaagagttttcattggccgttcaggctgcaaaagatatgaaagaaattttt
gatcaactaaacttgaaaacgtttgtcaaattttcaggaaataaaggtctgcaagtatat
ataccgcttccggagacatttacatttgccgaaacgggatcgtttacggaactaattgcc
cgctacctcgtatcgaaaaaaccggaaatgttcacaatcgaacgtttaaagaaaaaaaga
ggcagacgcttgtacatcgattacgttcaatatcgacaaggaaaaacaatcattgcacct
tattcagccagaggaaacgagaaaggtcttgtcgcttgtcctttatactgggaagaactc
gatcaattcacaccaagccaatgcacgatcgattgggtattgaaacgaatggaaacaact
ttatgtccatttgcctcctttttcgaagccaaagtcgatcaaccctttgccgaaattatc
aacgcattgcctcaactggattaa
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