Bacillus subtilis PY79: U712_07000
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Entry
U712_07000 CDS
T02937
Name
(GenBank) putative ATP-dependent DNA ligase ykoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsp
Bacillus subtilis PY79
Pathway
bsp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
U712_07000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsp03400
]
U712_07000
Enzymes [BR:
bsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
U712_07000
DNA repair and recombination proteins [BR:
bsp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
U712_07000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHA77346
LinkDB
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Position
complement(1367556..1369253)
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AA seq
565 aa
AA seq
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MELSSTFPEITQFAKTAFQHLEKELPLTLDGEIVCLVNPCRADFEHLQVRGRLKRPDKIQ
ESANARPCCFLAFDLLERSGEDVTLLSYLDRKKSLRELISAAKLPASPDPYAKETIQSIP
CYDHFDQLWEMVIKYDGEGIVAKKTNSKWLEKKRSSDWLKYKNFKQAYVCITGFNPNNGF
LTVSVLKNGIMTPIASVSHGMRDEEKSAIREIMEQHGHQTPSGEFTLEPSICAAVQYLTI
LQGTLREVSFIGFEFQMDWTECTYAQVIRHSKPVHPKLQFTSLDKIIFEKNKKTKEDFIQ
YMIEVSDYLLPFLKNRAVTVIRYPHGSRSESFFQKNKPDYAPDFVQSFYDGSHEHIVCED
MSTLLWLCNQLALEFHVPFQTIKSRRPAEIVIDLDPPSRDDFLMAVQAANELKRLLDSFG
ITSYPKLSGNKGIQLYIPLSPEAFTYEETRQFTQLIAEYCTNAFPELFTTERLIKNRHCK
LYLDYLQHAEGKTIICPYSTRGNELGTVAAPLYWHEVQSSLTPALFTIDTVIDRIKKQGC
PFFDFYRNPQDEPLSAILHQLKKKS
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
gtggagctcagcagcaccttccctgaaatcacacaattcgccaaaactgcctttcagcac
ctagaaaaagagcttccgctgacacttgacggtgaaatcgtatgtttggtgaatccctgt
cgtgcagattttgaacaccttcaagtgcgggggcgtttgaaaaggccagacaagattcag
gaatcggcaaacgcgcggccgtgctgctttctcgcctttgatttgttagagcgaagcgga
gaagatgtaacgcttctttcgtatttggaccgcaaaaaatcgctgcgtgaactcatatcc
gcagcaaagcttcctgcatctccagatccttacgcaaaagaaaccattcaatccattccc
tgttatgatcattttgatcaactctgggagatggtaataaaatatgacggagaaggaatt
gtagcgaagaaaacaaacagcaaatggcttgaaaagaagcggtcgtccgattggctcaaa
tataaaaactttaaacaagcttatgtttgcataacagggttcaaccctaacaacgggttt
ctgacggtatcggtgttaaaaaacggaataatgacaccgattgcctctgtctcgcacgga
atgcgtgatgaggaaaaaagcgctatacgcgagattatggaacagcacggacatcaaaca
ccctcaggcgaatttacgcttgaaccttcgatttgtgcagctgttcaatacttaacaatt
ctccaaggcacattaagagaggtatcgtttatcggtttcgaattccaaatggactggacc
gaatgcacgtatgcgcaagtcatacgacactccaaaccggttcacccaaagctccagttc
acaagcctggataaaatcatatttgaaaagaataaaaaaacaaaagaagattttattcag
tatatgattgaagtcagtgactacctgctcccatttctgaaaaaccgggctgtcaccgtc
atccgctatccgcatggatctaggagcgaatcatttttccaaaaaaacaagccggactat
gcgccggattttgttcagtctttctatgatggaagccatgaacatattgtctgtgaggat
atgtctacattgctatggctttgcaaccagcttgctttggagtttcacgttccttttcaa
accattaaaagcaggcgtccggctgagattgtcattgatttagacccgccttcgcgagat
gactttcttatggccgtgcaggccgcaaatgaactgaagcggctgttggattcctttggc
atcacatcgtacccgaagctgtccggcaacaaaggcatccagctttatattcccttgtct
cccgaggcatttacgtatgaagaaacacgccaatttacgcagctgatcgcagagtactgc
accaatgcatttcccgagctctttaccactgaacgcttgattaaaaacagacactgcaaa
ttgtatcttgattatttgcagcatgcagaaggaaaaacgattatctgtccctattcaacg
agaggaaatgagcttgggactgttgcagccccgctctactggcatgaggtgcaatcatct
ttaacacccgctctgtttacaattgatacggtcatcgatcgaattaagaagcagggctgc
ccattttttgatttttaccgcaacccgcaagacgaaccgcttagcgctatattgcatcag
ttgaagaaaaagagctga
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