Bacillus subtilis subsp. spizizenii TU-B-10: GYO_1664
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Entry
GYO_1664 CDS
T01635
Symbol
ykoU
Name
(GenBank) spore germination DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bst
Bacillus subtilis subsp. spizizenii TU-B-10
Pathway
bst03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GYO_1664 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bst03400
]
GYO_1664 (ykoU)
Enzymes [BR:
bst01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GYO_1664 (ykoU)
DNA repair and recombination proteins [BR:
bst03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GYO_1664 (ykoU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEP86309
UniProt:
G4NV71
LinkDB
All DBs
Position
complement(1513229..1515052)
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AA seq
607 aa
AA seq
DB search
MQPVLTSSPPIGAEWRYEVKYDGYRCILRIHSAGVTLTSRNGLELNSSFPEITQFAKTAF
LHMEKDLPLTLDGEIVCLVNPCRSDFEHIQVRGRLKRPDKIQESANARPCCFLAFDLLER
RGEDISPLSYLDRKKSLYDLMSAAKLPASPDPYAKETIQYIPCYDHFDPLWRMVTKFDGE
GIVAKKTNSKWLERKRSSDWLKYKNFKQAYVCITGFNPNNGFLTVSVLKNGVMTPIASVS
HGMRDEEKNAIREIMEQHGHKTSSGEFTLEPSICATVQYLTILQGTLREVSFVGFEFHMD
WTECTYAQVIRHSKSVHPKLQFTSLDKIIFEKNKKTKEDFIQYMIEVSDYLFPFLKNRAV
TVIRYPHGSRSESFFQKNKPDYAPDFVQSFYDGSHEHIVCEDMSTLLWLANQLALEFHVP
FQTIQSRRPAEIVIDLDPPSRDDFLMAVQAANELKRLFDSFGITSFPKLSGNKGIQLYIP
LSPEAFTYEETRQFTQLIAEYCTNAFPELFTTERLIKNRHGKLYLDYLQHAEGKTIICPY
STRGNDLGTVAAPLYWHEVQTSLTPAMFTIDTVVDRIKKQGCPFFDFYRNPQDEPLNAIL
HQLKKKS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgcagcccgtccttacttcgtcaccgccaataggagcagaatggcgctacgaagtaaaa
tatgacgggtaccgctgtattctccgcatccattcagcaggtgtgaccttaaccagcaga
aatggcttggagcttaacagtagctttcctgaaatcacgcaattcgccaaaaccgccttt
ttgcatatggaaaaagatcttccgctgacacttgatggcgaaatcgtctgtttggtgaac
ccttgccgttcagattttgaacacattcaggtgcggggacgtttgaaaagaccagataag
attcaggaatcggcaaacgcgcgtccgtgttgctttctcgcctttgatctgttagagcgc
cgcggagaagatatttcgcctctttcgtatctggaccggaaaaaatcgctgtacgatctc
atgtctgcggcaaagcttcctgcttctccagacccttatgctaaggaaactatccaatat
atcccatgctatgatcattttgatccgctttggagaatggttacgaaatttgacggagaa
ggaatcgtagcgaagaaaacaaacagcaaatggcttgaaagaaagcggtcgtccgattgg
ctcaaatataaaaactttaaacaagcttatgtttgtataacagggttcaacccaaacaat
ggatttctgacggtgtctgtgttaaaaaacggcgtaatgacaccgattgcctctgtctca
cacggaatgcgtgatgaggaaaaaaacgccatacgtgagattatggaacagcacggacat
aaaacatcttcaggcgaatttacgcttgaaccatcgatttgtgcaaccgttcaatactta
acgattctccaaggcacattgagagaggtatcgtttgtcggttttgaattccatatggac
tggaccgaatgtacttatgcgcaagtcatacgccactccaaatcggtccatccaaagctt
cagttcacaagcctggataaaatcatatttgaaaagaataaaaaaactaaagaagatttt
attcagtatatgattgaagtcagtgactacctgttcccatttctgaaaaaccgtgctgtc
acggtcatccgctatccgcatggctcaaggagcgaatcgtttttccaaaaaaacaagccg
gactatgcgccggattttgttcaatctttctatgacggaagccatgaacatattgtctgc
gaggatatgtccactttattatggcttgccaaccagcttgctttggagtttcatgtccct
tttcaaaccattcaaagcaggcgtccggctgagattgtgattgatttggacccgccttca
cgagatgactttctcatggctgtacaggctgcaaatgagttgaagcggctgtttgactcc
ttcggcatcacatcgtttccaaagctgtccggcaacaagggcatccagctttatattccc
ttgtcccctgaggcatttacgtatgaagaaacacgccagtttacacagctgatcgctgag
tactgcaccaatgcatttcccgagctatttaccactgaacgcttgattaaaaacaggcac
ggcaaattgtatcttgattatttgcagcatgcagaaggaaaaacgattatttgtccttat
tcgacaagagggaatgaccttggcactgtcgcggcaccgctctattggcacgaggtacaa
acctccttgacacccgctatgtttacaattgacaccgtcgttgatcggattaagaagcag
ggctgcccattttttgatttttaccgtaacccgcaagacgaacctcttaacgccatttta
catcagttgaagaaaaagagctga
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