Bacillus subtilis subsp. subtilis JH642: BSUA_01458
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Entry
BSUA_01458 CDS
T03443
Symbol
ykoU
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsul
Bacillus subtilis subsp. subtilis JH642
Pathway
bsul03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BSUA_01458 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsul03400
]
BSUA_01458 (ykoU)
Enzymes [BR:
bsul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BSUA_01458 (ykoU)
DNA repair and recombination proteins [BR:
bsul03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BSUA_01458 (ykoU)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AIC39744
LinkDB
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Position
complement(1388069..1389904)
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AA seq
611 aa
AA seq
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MAFTMQPVLTSSPPIGAEWRYEVKYDGYRCILRIHSSGVTLTSRNGVELSSTFPEITQFA
KTAFQHLEKELPLTLDGEIVCLVNPCRADFEHLQVRGRLKRPDKIQESANARPCCFLAFD
LLERSGEDVTLLSYLDRKKSLRELISAAKLPASPDPYAKETIQSIPCYDHFDQLWEMVIK
YDGEGIVAKKTNSKWLEKKRSSDWLKYKNFKQAYVCITGFNPNNGFLTVSVLKNGIMTPI
ASVSHGMRDEEKSAIREIMEQHGHQTPSGEFTLEPSICAAVQYLTILQGTLREVSFIGFE
FQMDWTECTYAQVIRHSKPVHPKLQFTSLDKIIFEKNKKTKEDFIQYMIEVSDYLLPFLK
NRAVTVIRYPHGSRSESFFQKNKPDYAPDFVQSFYDGSHEHIVCEDMSTLLWLCNQLALE
FHVPFQTIKSRRPAEIVIDLDPPSRDDFLMAVQAANELKRLLDSFGITSYPKLSGNKGIQ
LYIPLSPEAFTYEETRQFTQLIAEYCTNAFPELFTTERLIKNRHCKLYLDYLQHAEGKTI
ICPYSTRGNELGTVAAPLYWHEVQSSLTPALFTIDTVIDRIKKQGCPFFDFYRNPQDEPL
SAILHQLKKKS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttaccatgcagccggtcttaacttcgtcaccgccaatcggagcagaatggcgt
tacgaagtaaaatatgatgggtaccgctgtattctccgcatccattcttcaggtgtgacc
ttaaccagcagaaatggtgtggagctcagcagcaccttccctgaaatcacacaattcgcc
aaaactgcctttcagcacctagaaaaagagcttccgctgacacttgacggtgaaatcgta
tgtttggtgaatccctgtcgtgcagattttgaacaccttcaagtgcgggggcgtttgaaa
aggccagacaagattcaggaatcggcaaacgcgcggccgtgctgctttctcgcctttgat
ttgttagagcgaagcggagaagatgtaacgcttctttcgtatttggaccgcaaaaaatcg
ctgcgtgaactcatatccgcagcaaagcttcctgcatctccagatccttacgcaaaagaa
accattcaatccattccctgttatgatcattttgatcaactctgggagatggtaataaaa
tatgacggagaaggaattgtagcgaagaaaacaaacagcaaatggcttgaaaagaagcgg
tcgtccgattggctcaaatataaaaactttaaacaagcttatgtttgcataacagggttc
aaccctaacaacgggtttctgacggtatcggtgttaaaaaacggaataatgacaccgatt
gcctctgtctcgcacggaatgcgtgatgaggaaaaaagcgctatacgcgagattatggaa
cagcacggacatcaaacaccctcaggcgaatttacgcttgaaccttcgatttgtgcagct
gttcaatacttaacaattctccaaggcacattaagagaggtatcgtttatcggtttcgaa
ttccaaatggactggaccgaatgcacgtatgcgcaagtcatacgacactccaaaccggtt
cacccaaagctccagttcacaagcctggataaaatcatatttgaaaagaataaaaaaaca
aaagaagattttattcagtatatgattgaagtcagtgactacctgctcccatttctgaaa
aaccgggctgtcaccgtcatccgctatccgcatggatctaggagcgaatcatttttccaa
aaaaacaagccggactatgcgccggattttgttcagtctttctatgatggaagccatgaa
catattgtctgtgaggatatgtctacattgctatggctttgcaaccagcttgctttggag
tttcacgttccttttcaaaccattaaaagcaggcgtccggctgagattgtcattgattta
gacccgccttcgcgagatgactttcttatggccgtgcaggccgcaaatgaactgaagcgg
ctgttggattcctttggcatcacatcgtacccgaagctgtccggcaacaaaggcatccag
ctttatattcccttgtctcccgaggcatttacgtatgaagaaacacgccaatttacgcag
ctgatcgcagagtactgcaccaatgcatttcccgagctctttaccactgaacgcttgatt
aaaaacagacactgcaaattgtatcttgattatttgcagcatgcagaaggaaaaacgatt
atctgtccctattcaacgagaggaaatgagcttgggactgttgcagccccgctctactgg
catgaggtgcaatcatctttaacacccgctctgtttacaattgatacggtcatcgatcga
attaagaagcagggctgcccattttttgatttttaccgcaacccgcaagacgaaccgctt
agcgctatattgcatcagttgaagaaaaagagctga
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