Bos taurus (cow): 282187
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Entry
282187 CDS
T01008
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain precursor
KO
K06236
collagen type I alpha
Organism
bta
Bos taurus (cow)
Pathway
bta04151
PI3K-Akt signaling pathway
bta04510
Focal adhesion
bta04512
ECM-receptor interaction
bta04611
Platelet activation
bta04820
Cytoskeleton in muscle cells
bta04926
Relaxin signaling pathway
bta04933
AGE-RAGE signaling pathway in diabetic complications
bta04974
Protein digestion and absorption
bta05146
Amoebiasis
bta05165
Human papillomavirus infection
bta05205
Proteoglycans in cancer
bta05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
282187 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
282187 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
282187 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
282187 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
282187 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
282187 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
282187 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
282187 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
282187 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
282187 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
282187 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
282187 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bta00536
]
282187 (COL1A1)
Glycosaminoglycan binding proteins [BR:
bta00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
282187 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
282187
NCBI-ProteinID:
NP_001029211
BGD-bta:
BT10494
Ensembl:
ENSBTAG00000013103
VGNC:
27560
UniProt:
P02453
LinkDB
All DBs
Position
19:36457711..36474476
Genome browser
AA seq
1463 aa
AA seq
DB search
MFSFVDLRLLLLLAATALLTHGQEEGQEEGQEEDIPPVTCVQNGLRYHDRDVWKPVPCQI
CVCDNGNVLCDDVICDELKDCPNAKVPTDECCPVCPEGQESPTDQETTGVEGPKGDTGPR
GPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGISVPGPM
GPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRP
GERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQM
GPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEGGPQGPR
GSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQ
GPSGPPGPKGNSGEPGAPGSKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPAGLP
GPPGERGGPGSRGFPGADGVAGPKGPAGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLT
GSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVP
GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ
GVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQ
GAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDK
GEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPP
GPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPA
GKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVV
GLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAE
GSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPV
GARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR
GPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPGPPSGGYDLSFL
PQPPQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRD
LKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKNWYISKNPKEK
RHVWYGESMTGGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQT
GNLKKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPIID
VAPLDVGAPDQEFGFDVGPACFL
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctcctgacg
cacggccaagaggagggccaggaagaaggccaagaagaagacatcccaccagtcacctgc
gtacagaacggcctcaggtaccatgaccgagacgtgtggaaacccgtgccctgccagatc
tgtgtctgcgacaacggcaacgtgctgtgcgatgacgtgatctgcgacgaacttaaggac
tgtcctaacgccaaagtccccacggacgaatgctgccccgtctgccccgaaggccaggaa
tcacccacggaccaagaaaccaccggagtcgagggaccgaaaggagacactggcccccga
ggcccaaggggacccgccggcccccccggccgagatggcatccctggacaacctggactt
cccggaccccctggaccccccggacctcccggaccccctggcctcggaggaaactttgct
ccccagttgtcttacggctatgatgagaaatcaacaggaatttccgtgcctggtcccatg
ggtccttctggtcctcgtggtctccctggcccccctggcgcacctggtccccaaggtttc
caaggcccccctggtgagcctggcgagccaggagcctcaggtcccatgggtccccgtggt
ccccctggcccccctggcaagaacggagatgatggcgaagctggaaagcctggtcgtcct
ggtgagcgcgggcctcccggacctcagggtgctcggggattgcctggaacagctggcctc
cctggaatgaagggacacagaggtttcagtggtttggatggtgccaagggagatgctggt
cctgctggccccaagggcgagcctggtagccccggtgaaaatggagctcctggtcagatg
ggcccccgtggtctgcctggtgagagaggtcgccctggagcccctggccctgctggtgct
cgaggaaatgatggtgcgactggtgctgctgggccccctggtcccactggccccgctggt
cctcctggtttccctggtgctgtgggtgctaagggtgaaggtggtccccaaggaccccga
ggttctgaaggtccccagggtgtacgtggtgagcctggcccccctggccctgctggtgct
gctggccctgctggcaaccctggtgctgatggacagcctggtgctaaaggagccaatggc
gctcctggtattgctggtgctcctggcttccctggtgcccgaggcccctctggaccccag
ggccccagcggcccccctggccccaagggtaacagcggtgaacctggtgctcctggcagc
aaaggagacactggcgccaagggagaacccggtcccactggtattcaaggcccccctggc
cccgctggggaagaaggaaagcgaggagcccgaggtgaacctggacctgctggcctgcct
ggaccccctggcgagcgtggtggacctggaagccgtggtttccctggcgccgacggtgtt
gctggtcccaagggtcctgctggtgaacgcggtgctcctggccctgctggccccaaaggt
tctcctggtgaagctggtcgccccggtgaagctggtctgcccggtgccaagggtctgact
ggaagccctggcagcccgggtcctgatggcaaaactggcccccctggtcccgccggtcaa
gatggccgccctggacctccaggccctcccggtgcccgtggtcaggctggcgtgatgggt
ttccctggacctaaaggtgctgctggagagcctggaaaagctggagagcgaggtgttcct
ggaccccctggcgctgttggtcctgctggcaaagacggagaagctggagctcagggaccc
ccaggacctgctggccccgctggtgagagaggcgaacaaggccctgctggctcccctgga
ttccagggtctccccggccctgctggtcctcctggtgaagcaggcaaacctggtgaacag
ggtgttcctggagatcttggtgcccccggcccctctggagcaagaggcgagagaggtttc
cccggcgagcgtggtgtgcaagggccgcccggtcctgcaggtccccgtggggccaatggt
gcccctggcaacgatggtgctaagggtgatgctggtgcccctggagcccccggtagccag
ggtgcccctggccttcaaggaatgcctggtgaacgaggtgcagctggtcttccaggccct
aagggtgacagaggggatgctggtcccaaaggtgctgatggtgctcctggcaaagatggc
gtccgtggtctgactggtcccatcggtcctcctggccccgctggtgcccctggtgacaag
ggtgaagctggtcctagtggcccagccggtcccactggagctcgtggtgcccccggtgac
cgtggtgagcctggtccccccggccctgctggcttcgctggcccccctggtgctgatggc
caacctggtgctaaaggcgaacctggtgatgctggtgctaaaggtgacgctggtcccccc
ggccctgctgggcccgctggaccccccggccccattggtaacgttggtgctcccggaccc
aaaggtgctcgtggcagcgctggtccccctggtgctactggtttcccaggtgctgctggc
cgagtcggtccccccggcccctctggaaatgctggaccccctggccctcctggccctgct
ggcaaagaaggcagcaaaggcccccgcggtgagactggccccgctgggcgtcccggtgaa
gtcggtccccctggtccccctggccccgctggtgagaaaggagcccctggtgctgacgga
cctgctggagctcctggcactcctggacctcaaggtattgctggacagcgtggtgtggtc
ggcctgcctggtcagagaggagaaagaggcttccctggtcttcctggcccctctggtgaa
cccggcaaacaaggtccttctggagcaagtggtgaacgtggcccccctggtcccatgggc
ccccctggattggctggaccccctggcgagtctggacgtgagggagctcctggtgctgaa
ggatcccctggacgagatggttctcctggcgccaagggtgaccgtggtgagaccggccct
gctggacctcctggtgctcctggcgctcccggtgcccccggccctgtcggacctgccggc
aagagcggtgatcgtggtgagaccggtcctgctggtcctgctggtcccattggccccgtt
ggtgcccgtggccccgctggaccccaaggcccccgtggtgacaagggtgagacaggcgaa
cagggcgacagaggcattaagggtcaccgtggcttctctggtctccagggtccccccggc
cctcccggctctcctggtgagcaaggtccttccggagcctctggtcctgctggtccccgc
ggtccccctggctctgctggttctcccggcaaagatggactcaatggtctcccaggcccc
atcggtccccctgggcctcgaggtcgcactggtgatgctggtcctgctggtcctcccggc
cctcctggaccccctggtcccccaggtcctcccagcggcggctacgacttgagcttcctg
ccccagccacctcaagagaaggctcacgatggtggccgctactaccgggctgatgatgcc
aatgtggtccgtgaccgtgacctcgaggtggacaccaccctcaagagcctgagccagcag
atcgagaacatccggagccctgaaggcagccgcaagaaccccgcccgcacctgccgtgac
ctcaagatgtgccactctgactggaagagcggagaatactggattgaccccaaccaaggc
tgcaacctggatgccattaaggtcttctgcaacatggaaaccggtgagacctgtgtatac
cccactcagcccagcgtggcccagaagaactggtatatcagcaagaaccccaaggaaaag
aggcacgtctggtacggcgagagcatgaccggcggattccagttcgagtatggcggccag
gggtccgatcctgccgatgtggccatccagctgactttcctgcgcctgatgtccaccgag
gcctcccagaacatcacctaccactgcaagaacagcgtggcctacatggaccagcagact
ggcaacctcaagaaggccctgctcctccagggctccaacgagatcgagatccgggccgag
ggcaacagccgcttcacctacagcgtcacctacgatggctgcacgagtcacaccggagcc
tggggcaagacagtgatcgaatacaaaaccaccaagacctcccgcttgcccatcatcgat
gtggcccccttggacgttggcgccccagaccaggaattcggcttcgacgttggccctgcc
tgcttcctgtaa
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integrated database retrieval system