Burkholderia territorii: WS51_27065
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Entry
WS51_27065 CDS
T04843
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
btei
Burkholderia territorii
Pathway
btei03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
btei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WS51_27065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btei03400
]
WS51_27065
Enzymes [BR:
btei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WS51_27065
DNA repair and recombination proteins [BR:
btei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
WS51_27065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AOI67370
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All DBs
Position
3:196238..199054
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AA seq
938 aa
AA seq
DB search
MPGKLDPYRRKRHFGETPEPEGAHGRRRAKAKADAQPAARARARAGHPLRFVIQEHHARR
LHYDFRLELDGTLKSWAVPKGPSLDPSVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVV
VWDEGTWTPDGGLAQARDGYRAGKLTFRLDGEKLHGGWALVRSGRQEGRQEQWLLIKERD
DDARGADEFDVVGERPGSVHDGAGRAARADSNGGSKRTRAAPRGRGDEAGKHDARGARHD
GRDRARDDRDRAPADPSAIEGAVRAPLPERVAPQLATLVDGPPHQGDWRYELKFDGYRIL
ARISGKGTRRHVKLMTREGRDWTAKLRAQREALGALAVDDAWLDGEAVVLGANGLPDFQA
LQNALGAGRSDAVTLFVFDLPYLDGHDLRDAPLTARRALLEPLLADSDPARVRFSPDLGD
DVASLIASACDTGLEGLIGKRADSRYRAGRSPAWIKLKCRRRQEFVIGGYTEPSGSRHGF
GALLLGVHEPAPGGKRTRGPAPLRYVGRVGTGFDARMLDRLASILRKHERDTAPFDPPPR
ERSRTRVHWIEPTLVAECEFAEWTGDGIVRQAAFVALREDKPATQIVREVPKHANTEVAM
DQRQTTHDDKHRAKHASHDANGREHSARSRASARTTGSDDTGPDRLGRVRITHPDRVLDP
ASGTRKIDLARYWQWVAPWLLPDLKGRPVSLVRAPGDIAGELFFQKHAERREIPFVTQHA
GLDPGHGPLLSLDSVDALLGAAQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWSTM
IEAAQLVRGLLDELGLASFCKTSGGKGLHVVVPITRHLGWDDVKDFSRAVAQHVAAALPD
RFTATMGPRHRRGKIFIDYLRNGRGASTIAAYSTRARPGMGVSVPLRWDEVPGTTGGAQW
TIDTLHERLDRLERDPWEGYDDTRQRITAQMRARLDAS
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgcccggcaagctcgatccatatcgccgcaaacgccacttcggcgagacgccggaaccc
gaaggcgcgcacgggcgtcggcgggcgaaggcgaaggccgatgcgcagccggccgctcgc
gcgcgcgcgcgtgccggccatccgctgcgcttcgtgatccaggaacatcatgcaaggcga
ttgcactatgacttccggctggaactcgacggcacgctgaagtcgtgggccgtgccgaag
gggccgagcctcgatccgtcggtgaagcgtcttgccgtgcatgtcgaggaccatccgctc
gaatatgcgtcgttcgaaggcgagattccggccgggcattacggcgcggggtcggtcgtc
gtctgggacgaaggcacgtggacgcccgacggcggactcgcgcaggcacgcgacggctat
cgcgcgggcaagctgacgttccggctcgacggcgaaaagctgcacggcggctgggcgctc
gtgcgcagcgggcgccaggaggggcggcaggagcagtggctgctgatcaaggagcgcgac
gacgatgcgcgcggcgcggatgaattcgacgtcgtcggcgagcggccggggagtgtgcat
gacggggccgggcgggcggcgcgggcggattcgaacggcggctcgaagcgcacgcgtgcg
gcgccgcgcggccgcggcgacgaggccggaaagcacgacgcgcgcggcgcgcggcatgac
ggccgcgaccgcgctcgagacgaccgcgatcgcgcgcctgcggatccgtccgcgatcgaa
ggcgcggtgcgcgcgccgttgcccgagcgcgtcgcgccgcagctcgcgacgctggtcgac
ggtccgccgcaccagggcgactggcgctacgaactgaaattcgacggctaccggatcctc
gcgcgcatttccggcaagggcacgcgccggcacgtgaagctgatgacgcgcgaaggtcgc
gactggaccgcgaagctgcgcgcgcaacgcgaggcgctcggggcgctcgccgtcgacgac
gcatggctcgacggcgaggccgtcgtgctcggcgcgaacggtcttcccgatttccaggcg
cttcagaacgccctcggtgcgggacgctcggatgcggtcacgctgttcgtattcgatctg
ccctatctcgacggacacgacttgcgcgacgcaccgctcaccgcacgccgcgcgctgctc
gaaccgctgctggccgacagcgaccccgcacgagtgcgcttttcgcccgatctcggcgac
gacgttgcgtcgctgatcgcgagcgcatgcgataccggtctcgaagggctgatcggcaag
cgcgcggactcgcgctatcgggcgggacgttcgcccgcatggatcaagctcaaatgcagg
cgccggcaggagttcgtgatcggcggctataccgagccatcgggcagccgtcacggcttc
ggtgcgctgctgctcggcgtgcacgaaccggcgccgggcggcaagcgcacgcgcgggccg
gcaccgctgcgctatgtcgggcgggtcggcacgggcttcgacgcgcgcatgctcgaccgg
cttgcgtcgatcctgcgcaagcatgagcgcgatacggcgccgttcgatccgccgccgcgc
gagcgctcgcgcacacgtgtgcactggatcgagccgacgctcgtcgccgaatgcgaattc
gcggagtggaccggcgacggcatcgtgcggcaggccgcgttcgtcgcgctgcgcgaggac
aagccggccacgcagatcgtccgcgaagtgccgaaacatgcgaatacggaggtggcgatg
gatcaacgtcagaccacgcacgacgacaaacaccgcgcgaagcacgcgtcgcacgacgcg
aatggccgcgagcactccgcgcgctcgcgcgcatccgcccgcacgacgggcagcgacgat
accggcccggaccgcctcggccgcgtgcgtatcacccatcccgaccgcgtgctcgatccg
gccagcggcacgcgcaagatcgatctcgcgcgttactggcaatgggtcgcgccatggctg
ctgccggacctgaaggggcggcccgtgtcgctggtgcgcgcgcctggcgacatcgcgggc
gagctgttcttccagaagcatgccgagcggcgcgagattccgttcgtcacgcagcacgcc
gggctcgatccggggcacggtccgctgctgtcgctcgacagtgtcgacgcgctgctcggc
gcggcgcagatgggcacgatcgagttgcatacgtggaatgcgcatgcgtcgaacatcgag
cggccggaccggatcgtgttcgacctcgaccccgatccggcgctgccgtggagcacgatg
atcgaggccgcgcaactcgtgcgcgggctgctcgacgagctggggctcgcgtcgttctgc
aagacgagcggcggcaagggcctgcatgtggtcgtgccgatcacgcggcacctcggctgg
gacgacgtgaaggacttctcgcgcgccgtcgcgcagcacgtcgcggccgcgttgcccgac
cgtttcaccgcgacgatgggcccgcgtcatcgtcgcggcaagatcttcattgactacctg
cgcaacggtcgcggcgcgagcacgatcgccgcgtattcgacgcgtgcgcggcccgggatg
ggcgtgtccgtgccgctgcgctgggacgaagtgcccggcacgaccggcggcgcgcaatgg
acgatcgacacgctgcatgaacggctcgaccggctcgagcgcgatccgtgggaaggctac
gacgacacgcggcagcgcatcaccgcgcagatgcgcgcgcggctcgatgcatcgtga
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