Bacillus thuringiensis serovar finitimus YBT-020: YBT020_22550
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Entry
YBT020_22550 CDS
T01839
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
btf
Bacillus thuringiensis serovar finitimus YBT-020
Pathway
btf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
btf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
YBT020_22550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btf03400
]
YBT020_22550
Enzymes [BR:
btf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
YBT020_22550
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
YBT020_22550
DNA repair and recombination proteins [BR:
btf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
YBT020_22550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ADY23738
LinkDB
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Position
complement(4395559..4396389)
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AA seq
276 aa
AA seq
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MPELPEVENVRRTLENLVTGKTIEDVIITYPKIVKRPDDAEIFKEMLKGEMIENIKRRGK
FLLLYVTNYVIVSHLRMEGKFLLHQEDEPINKHTHVRFLFTDGTELHYKDVRKFGTMHLF
KKGEEMNQMPLADLGPEPFDAELTPQYLQERLQKTNRKIKVVLLDQRLLVGLGNIYVDEV
LFRSQIHPEREASSLTAEEIERIYEATVTTLGEAVKRGGSTIRTYINSQGQIGSFQELLN
VYGKKGEPCVTCGTILEKTVVGGRGTHYCPICQPRI
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaggttgaaaacgtcagacggacacttgaaaatcttgtaacagga
aaaacaattgaagatgtcattattacctatcccaaaatcgtaaaacgtccagatgatgca
gaaatctttaaagagatgctaaaaggcgagatgattgaaaatataaagcgaagaggaaag
tttttgcttttatatgtaacgaattatgtcattgtttcacatttgcgtatggaaggtaag
tttttactgcatcaagaggatgagccaattaataagcatacgcacgtccgtttcttattt
acagatggaacggaattacattataaagatgtgagaaagtttggtacgatgcatctcttt
aaaaaaggtgaggaaatgaatcaaatgcctcttgctgacttaggtccggagccatttgat
gctgaattgacaccacagtatttacaagagagattgcaaaagacaaatcgtaaaataaaa
gttgtattattagaccagcgtcttttagtagggcttggaaatatatatgtagatgaagtt
ttattccgttctcaaattcatccagaacgagaagcgtcgtctttaacagcagaagaaatt
gagcggatttatgaggcgactgttacaacgttaggcgaagcagtgaagcgtggcggaagt
acaattcgaacgtatatcaactcacaagggcaaattggctcattccaagaacttctaaat
gtatatggaaaaaaaggagaaccgtgtgtgacttgcggtacgatattagaaaaaacagtt
gttggcggaagaggaacgcattactgcccgatttgtcagcctagaatatag
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