Bifidobacterium thermophilum: D805_1783
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Entry
D805_1783 CDS
T02505
Name
(GenBank) LigA protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
btp
Bifidobacterium thermophilum
Pathway
btp03030
DNA replication
btp03410
Base excision repair
btp03420
Nucleotide excision repair
btp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
btp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D805_1783
03410 Base excision repair
D805_1783
03420 Nucleotide excision repair
D805_1783
03430 Mismatch repair
D805_1783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
btp03032
]
D805_1783
03400 DNA repair and recombination proteins [BR:
btp03400
]
D805_1783
Enzymes [BR:
btp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D805_1783
DNA replication proteins [BR:
btp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D805_1783
DNA repair and recombination proteins [BR:
btp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D805_1783
NER (nucleotide excision repair)
GGR (global genome repair) factors
D805_1783
MMR (mismatch excision repair)
DNA ligase
D805_1783
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D805_1783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
AGH42050
UniProt:
M4REV5
LinkDB
All DBs
Position
complement(2198637..2201420)
Genome browser
AA seq
927 aa
AA seq
DB search
MTAHDAHKAGEAEGEQLAWDFDAPDQEAGNTPATGTQGIPVAADEGVRKYAPGSVQWIVA
LRADDEDALRLDRLDVSVMDADAAARLWAKVAAWVESDQVAYYIDDSPVSSDAAYDARMR
CLQRLEAAFPSLDSPQSPTHRVGGAFSNDFVSVRHPSRMMSLDDVFSIEELHDWYNGVRE
DLEWPEDKPLPMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVVGEDITMNVRTISTIPQN
LAGPASDIPEFVEIRGEVFMRWDDFHALNERNEDEGHAPFANPRNAAAGSLRQKDPRITA
TRRLSFYAHGLGTLRWGEGNAHQGHDQVDDQSQAYDLYKKWGIPVSPHNREVTDFSQILD
MIDYYGEHRGDIEHALDGIVVKVDDLALQRRLGATSRAPRWAIAYKYPPEEVNTELLNII
VQVGRTGRVTPVAVLKPVYVAGSTVARTTLHNPFEVKRKGILIGDTVVVRKAGDVIPELV
GPVLERRKGREDQLHEFVMPTRCPSCGAVLAPAKEGDKDIRCPNVESCPAQLTERIINLG
SRKAFDIEHLGDQSAIALTNPEENRPDSVASYDPYRTEIDVKPGQEPEPYEPVEGLQLPP
MQTPVLSSEAGLFGLDADMLRDVQVWREAPIIEVREQTDENGKKRKIRRRIGGSGLWHQV
PAFWTTPTNAKAATSGKAIEQANARGDDLESYPGYAVPRDAHVVRELTRTLRDGTVARQP
VYVRPMENTYKLLEEINKAKQADLWRVLVALSIRRLGPPTARTIADHFGSLDAIEHASVD
DLTEIGGIGEEIASSVVDWFAKSREPEDWRGKILAAWKAAGVGQVERENTEPQTLAGMTV
VVTGSLEDFSRESAKEAIVSHGGKAAGSVSKKTTYVVVGENPGSKATKAEELGLPILDET
QFRRLLDTGDPGAPAAQLGAAQPQLTD
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgactgcacatgatgcacacaaggctggcgaggctgaaggggaacagctggcgtgggat
ttcgacgctcctgatcaggaggccggaaatacgccagcaacgggcacacaaggcattccg
gtggccgcagacgaaggcgtgcgcaagtacgcgcccggcagtgtgcagtggatagtggct
ctgcgcgcggatgacgaggatgcgctgcggctcgaccggctcgatgtcagcgtcatggat
gcggatgcggcggcacggctgtgggcgaaggtcgccgcgtgggtggaaagcgaccaggtc
gcctactatatcgacgattcgccggtttcctcggatgctgcgtatgacgcgcgcatgcgc
tgtctgcagcgtcttgaggccgcgttcccctcgcttgattccccgcagtcgcccacccac
cgtgtcggaggggcgttctccaatgatttcgtgtcggtgcgtcacccttcgcggatgatg
agcctcgacgacgtgttctcgattgaggagctgcacgactggtacaacggcgtgcgggaa
gacctcgaatggccggaagacaagccgctgccgatgacctgcgaagtcaaaatcgatgga
ctcgccttgaacctcatctaccgcaacggcgtactcgaacagggcttgacacgcggcgac
ggcgtggtcggcgaagacatcacgatgaacgtgcgcacgatttcgaccattccacagaat
cttgccggtcccgcttcggatatccctgaattcgtggagattcgcggcgaagtgttcatg
cggtgggatgatttccacgccctcaacgaacgcaacgaggacgagggacacgccccgttc
gccaacccgcgcaatgcggccgccggttcgctcaggcagaaggacccgcggatcaccgcg
accagacgattgagcttctacgcgcacggcctgggcactttgcgttggggtgagggcaac
gcgcatcaggggcacgaccaggtggacgaccagtcgcaggcgtacgacctgtacaagaag
tggggaattccggtatccccgcataaccgcgaggtcacggatttcagccagattctcgac
atgatcgactactacggcgagcaccgaggtgatatcgagcatgcgctcgatggcattgtc
gtcaaggttgacgatttggcgttgcaacgccggctgggcgccacctcgcgcgccccgcgc
tgggcaatcgcctacaagtacccgccggaggaggtcaacaccgaactgctcaacatcatc
gtgcaggtcgggcgtacaggacgcgtcacgccggtcgccgtactcaaacccgtgtacgtc
gcggggtcgacggtcgcacgcaccacgctgcataaccccttcgaagtcaagcgcaaaggt
attctcatcggcgataccgtggttgtgcgcaaggcaggcgacgtaatcccggagcttgtc
gggccggtgcttgaacgacgcaaaggccgggaagaccagctgcatgagttcgtgatgccc
acccgctgcccgtcctgtggagcggtgctcgccccggcgaaggaaggcgacaaggatatc
cgctgcccaaatgtcgaatcctgcccggcgcagctgaccgagcggattatcaacctgggg
tcgcgcaaggccttcgacatcgagcatctgggcgaccagagcgcaatcgcgttgaccaat
ccagaggagaaccggccggattccgtggcatcctacgacccgtaccgcaccgagatcgac
gtgaagcctggccaagaaccggagccctatgagcctgtggaaggcttgcaactgccgccc
atgcagacgccggtattgtccagcgaagcaggactgttcgggctggacgccgatatgctg
cgcgatgtgcaggtgtggcgtgaggcgccgattatcgaagtgcgcgagcagactgacgaa
aacggaaagaaacgcaagatacgccgtcggattggcggatctggcctgtggcatcaggtg
ccggcgttctggacgacaccgacgaacgcgaaagccgcgaccagtgggaaggcgatcgaa
caggcgaacgcgcgcggggacgatctggaatcctacccggggtacgctgtgccgcgcgac
gcgcatgtcgtgcgcgagctgacccggaccctgcgcgacggcacggttgcgcgccagccg
gtgtacgtgcggccgatggagaacacgtacaagctgctcgaagagatcaacaaggccaag
caggcggatttgtggcgtgtactggttgcattgtccatcaggcggttggggccgccgacc
gcccgcactattgccgatcatttcgggtcgcttgatgcgattgagcatgccagtgttgat
gatttgactgagatcggcggtatcggtgaggaaatcgccagttcggtggtggactggttc
gccaaatcccgtgagccggaggattggcggggcaagattcttgcagcgtggaaggccgcc
ggtgtcgggcaggttgagcgtgagaacactgagccgcagaccttggctggcatgacggtt
gttgtgactggatcgttggaggatttcagcagggaatccgccaaggaggcgattgtgtcg
catggcggcaaggctgcggggtcggtcagtaagaaaaccacgtatgtggtggtcggggag
aacccggggtcgaaggcgacgaaagccgaggaacttggcctgccgatactcgatgaaacc
cagttccgccggttgttggacactggtgatcccggagcgcccgctgcacagcttggcgct
gcacagccccaactcactgactga
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