Bibersteinia trehalosi USDA-ARS-USMARC-188: F542_5940
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Entry
F542_5940 CDS
T03017
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
btre
Bibersteinia trehalosi USDA-ARS-USMARC-188
Pathway
btre03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
btre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
F542_5940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btre03400
]
F542_5940
Enzymes [BR:
btre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
F542_5940
DNA repair and recombination proteins [BR:
btre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
F542_5940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
ResIII
AAA_12
AAA_30
AAA_18
AAA_25
DEAD
Motif
Other DBs
NCBI-ProteinID:
AHG81312
UniProt:
A0A4V7I8K4
LinkDB
All DBs
Position
complement(601167..604808)
Genome browser
AA seq
1213 aa
AA seq
DB search
MLKFPYSVFWGITMNILEPLSLPLNQSVLIEASAGTGKTYTMANLYLRLILGIGCEPLTT
EQILVVTFTKAATQELRDRIRTKLGNAAKWFQDVESENSKAAFAQDPFLFELYQAIEPNL
NTARLRLKIAEREMDLASIFTIDSFSQKMLFQYAFDSGMRFDIDLQPDEKNLLARLSEES
WRELFYSMSLAESELVRKHLKTPAQALKIVQASLSGSLPALSAHQSVVQSRLADFAQQKS
LAISQLKQFWQENSAQISALVLGELDKKYPPKTPKSLSRRSYTPARTSQYLAELDLWAKT
HSTALPANWEKFTQSFIANKAEKGADPLVSPLLEQAEQLAQHYSQQFSEKQEYNILIFRF
LTHLRKKLSAYKQSHREKSFNDITDFLHTALQGENGDRFAQAIRTQFRFAMIDEFQDTNR
QQYEIFQRIFIQGVENQGFIMIGDPKQSIYKFRHADIFSYLNAAKQVDLCVTMDKNWRSV
PQIVSDINALFSFPENGKSPFIYQGIQFQAVQAKEPDETLQGASQSNCYLLPEFDAQHAA
EYCAYHIQQQLKLAAQGKLFLQKNGEKHPLAAKDITILVRGKNEAELIKHELWRRKIQAI
YLSARDSVYESAEAQELLFILQACVNPYHQGNLLTAVGTSLWSLAAHEIFQLKHDEQRWE
SYVEQFIHYHRIWQQQGILPMLHKIFLEQGIIQRLSSQENAERRITDLLHLAELLQEAML
ECRNESALIQWFQQQLNEPNGQSDEQKLRLESEQALIKIVTIHGSKGLEYPVVWLPFIAK
ASKPFSEIGAFGKKNTPTTYHDENHALRWAFSPLSEQEQQQLTKEEFAEDLRLLYVALTR
AKHQLNLILPEQFDENWNSVSYLLSNGEIGLGGEEIQQPTEQLLAQKQLRCQIQPFSPVL
ADTWQATNEAPTILQPKVFQTQIHSNRQLTSFSALHAQHERLQNRELNQPLVISDDAQDY
DRSQDYLAADDSNEESKLFYSPFSFPHNTKVGNVLHKVFEEWHFAEPLTSAQIQEKICQP
LDLSEEWLEPLQLWLNQIIYTPFADNLRLADFASDKRLNEWQFYLRLRNEKALPQLNQLL
KAESRLAKNLPDFHFKQLDGFVRGFVDMVVQEAGKFYIIDYKSNYLGKLPQDYCAEKIEK
AMGQYRYDLQYLLYTLALHRYLNSRLGKDYSYEKHFGGVAYLFLRGMNGELNSGVYFDRP
SQTLIEKLDQLFD
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaattcccttattctgtattttggggcataaccatgaatattcttgagccactc
tctcttcctctaaatcaatccgtattaattgaagcttctgcaggtacagggaaaacctat
accatggcaaatctctatctacgtttaattttaggtataggatgcgagcctttaaccaca
gaacaaatattggttgtcacctttaccaaagcagcaactcaagagctaagagatcgtatt
cgaactaaattaggcaatgcagctaagtggtttcaagatgtggaaagtgaaaactcaaaa
gcagcatttgcgcaagatccttttttattcgagctctatcaagccattgagccaaacctt
aataccgctcgcttacgcttaaaaattgctgagcgagaaatggatcttgccagtattttt
actattgatagcttcagccaaaaaatgctgtttcagtatgcttttgattctggaatgcgc
tttgatattgacttacaacctgatgaaaaaaatttattagcgcgcttaagtgaagagagc
tggcgagagttattttattcgatgtcattagccgaaagcgaattggtacgtaaacacctc
aaaacccctgcacaggctttaaaaatcgtacaagcttccctttccggctcattaccagca
ttatccgcacaccaatccgtcgttcaaagccggctggccgactttgctcaacaaaaaagc
ctcgctattagccaattaaaacaattctggcaagaaaatagcgcccaaatcagcgcccta
gttttaggtgagttggataaaaaatacccgccaaaaacgccaaaatctctcagccgccgt
agttacacacctgctcgtacttcacaatatcttgccgaacttgatttatgggcaaaaacg
catagtacggccctccccgcaaattgggaaaaattcacccaatcttttatcgcaaataaa
gcagaaaaaggggctgatccgttagtctcgccactccttgagcaggcagagcaattagct
caacattactcacagcagtttagtgagaagcaggaatataacattctaatttttcgtttt
ttaacccacctacgcaagaaactctcggcctataaacaatcgcaccgagaaaaaagcttt
aacgacataaccgatttcttacacaccgcgctacaaggtgaaaatggtgatcgctttgcc
caagctattcgtacacaattccgttttgcgatgatcgatgagttccaagatactaaccgc
caacagtatgaaattttccagcgcatttttattcaaggggtagaaaatcaaggttttatc
atgattggcgacccaaaacagtcgatctataaattccgccatgcggatattttctcgtat
ctcaatgcagctaaacaggtagatctatgcgtaaccatggataaaaactggcgctcagtg
ccacaaattgttagcgatattaatgcgctgtttagttttccggaaaatggcaaaagtccg
tttatttatcaaggtattcaattccaagcagtacaggctaaagaacctgatgaaaccttg
cagggagcaagccaaagcaattgctatttgttacctgaatttgatgcacagcacgccgcc
gaatattgtgcttaccacatccaacaacagctcaaacttgctgcacaaggcaaattattt
ttgcaaaaaaatggcgagaaacatccgcttgcagccaaagacatcacaattttagttcga
ggtaaaaacgaggctgaattgataaaacatgagctatggcgacgaaaaatccaagcaatc
tatctctctgcgcgtgatagtgtgtatgaatctgccgaagcacaagaattgctgtttatt
ttgcaagcctgcgttaatccatatcaccaaggcaatttattaaccgcagtaggcacctca
ctttggagtcttgctgcccacgaaatttttcagttaaagcatgatgaacaacgttgggaa
agctatgttgagcaatttattcattatcaccgcatctggcagcagcaaggtattttaccg
atgctccataaaatcttcctagaacaaggcattattcagcgtctaagtagtcaagaaaat
gctgagcgacgcattaccgatttacttcaccttgccgagctactacaagaggcaatgctc
gaatgccgtaatgaaagcgcattaattcaatggtttcagcagcaacttaatgaacccaat
gggcaatctgatgaacaaaaattacgcttagaaagcgaacaagcgttgataaaaattgtg
acaattcacggctcaaaaggcttagaatacccagttgtttggttaccatttattgcaaaa
gcaagcaagccattcagtgaaataggcgcctttggtaaaaagaatacacccacaacttac
catgatgaaaaccatgcattgcgttgggctttttcgcctctttctgaacaagaacaacaa
caacttacgaaagaagaatttgcagaagatttacgtttgctttatgttgctttaacccga
gcaaaacaccaattaaacctgattttacctgagcaattcgacgaaaattggaatagtgta
agctacctgcttagtaatggcgaaattggtttgggcggtgaagagattcaacaaccaacc
gagcaacttttggctcaaaagcaactccgctgccaaatacagccatttagccctgtacta
gctgatacttggcaagccacaaatgaagcgccaacaatccttcagccaaaagtttttcaa
acccagatccattcaaataggcagctcaccagttttagtgcattacatgcacaacatgag
cgtttgcaaaatagggagctaaatcaaccgcttgttatcagcgatgacgcacaagattac
gatcgcagccaagactatttagcagcggatgatagcaacgaggaaagtaaactgttctac
agccctttcagcttcccgcataatactaaagttggtaatgtattgcataaagtatttgaa
gaatggcactttgccgagccactgacaagcgctcaaattcaggaaaaaatttgccaaccg
ctagacttaagcgaagaatggcttgagcctctacaactgtggctcaatcaaattatctat
acaccttttgccgataatcttcgcctagctgattttgctagtgataaacgcttaaatgaa
tggcaattttatctgcgtttacgtaatgaaaaagcgttgccacaacttaatcagcttttg
aaagcagaaagccgtttagccaaaaatctaccagattttcattttaaacagctagatggc
tttgtacgcggttttgttgatatggtggtacaagaggcaggcaaattctatattatcgac
tacaaatcaaactatctaggtaaactgccacaagattattgtgctgaaaaaatcgaaaaa
gcgatggggcaatatcgctatgacctacaatatctgctctatacacttgcactacaccgt
tacttgaattctcggcttggtaaagattatagttatgaaaagcattttggcggggtagct
tacctgtttttacggggaatgaatggtgagctaaacagcggtgtttattttgaccgacct
agtcaaaccctaatagaaaaactcgatcaactatttgattaa
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