Burkholderia sp. CCGE1001: BC1001_1764
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Entry
BC1001_1764 CDS
T01424
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bug
Burkholderia sp. CCGE1001
Pathway
bug03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BC1001_1764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bug03400
]
BC1001_1764
Enzymes [BR:
bug01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BC1001_1764
DNA repair and recombination proteins [BR:
bug03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BC1001_1764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADX55198
LinkDB
All DBs
Position
1:2024715..2026673
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AA seq
652 aa
AA seq
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MSRWSSSRASRKHPARDSPADGMPALVEPQLATLAEHIPMDGDWSYEIKFDGYRMLERIE
GGDVRLFTRNGHDWTERMPRLRDALRALPVDNAWIDAEAVVLNDAGAPDFNALQNAFDRR
SAAEIVLFVFDLLWINGTDIREQPLRARRKLLRELMDEVNTPLLRYAEDFAEDPASLVSS
ACRMKLEGIIGKRGDASYRSGRSTDWIKLKCTLRQEFVVGGISRVNGAKSGVRSLLLGVH
EEDGSLRYAGHVGPNFTPRQSAAFAKRIAGLKAAQSPFFNAPQPERDREFHWLTPEVVAE
VSFLEWTPGGEIRHALFHAIREDKPAGTVTEEQVVDAPDEGHFGSTRERPGPHGTVLVGD
IKISNPQRVIDPITGHTKLDLVRYYDAIAEWALPYLHNRPLTLVRAPETLNGELFFQKHA
ERMRIPGVEELPVDLNPNHPPLLVANNIDALVGLAQMSVVELHSWNAVAPDLDHPDRVIF
DLDPDPALPWSAMLEAAGLLKTVLDELGLRSFAKTSGGKGFHIVVPLTRRQGWDEVKDFS
HAVAQHMARVVPQKFSAISGPRNRVGKIFIDYLRNGRGASTVAPFSVRARGGMAVSMPVS
WDELKNVVRGDEWTMKKAVARQRSLKADPWAGFWQARQGITSAMRRAVGVKK
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgatggagttcgtcacgagcgagccggaagcacccggcgagagattcaccggcc
gacggcatgccggcgctcgtcgagccgcagctggcgaccttagccgagcacatcccgatg
gacggcgactggtcgtacgagatcaagttcgacgggtatcggatgctggagcggatcgag
ggcggcgacgttcgtctcttcacccgaaacggtcacgactggactgagcgcatgccgcgc
ttgcgcgacgcgctgcgtgcgttgcccgtggacaacgcgtggatcgatgcagaggccgtc
gtcctcaacgacgctggcgcgcccgacttcaatgcgctgcagaatgcgttcgaccgacgg
agcgcggccgagattgtgctcttcgttttcgatctgctctggatcaacggcaccgacata
cgagagcagccgctgcgcgcgcgccgaaagctgctgcgcgagctgatggacgaagtcaac
accccgctgctccgctacgcggaggatttcgccgaggatccagcctcgctggtgtcatct
gcgtgccgcatgaagttggaaggcatcatcggcaaacggggcgacgcgtcttaccggtcc
ggtcgctcgaccgactggatcaagctcaaatgcacactccgacaggaattcgtcgtcggt
ggtatatcacgcgtcaacggcgcgaaatccggcgtccggtcgctgctcctgggcgtgcac
gaagaggatggttctctgcggtatgcaggccatgtcggaccgaactttacaccgcggcag
agcgcggctttcgcaaagcggatcgccgggctcaaggccgcgcagtcaccgttcttcaac
gcgccgcagccggagcgcgaccgcgaattccactggttgacgccggaggtggttgccgaa
gtgtcgtttcttgaatggacaccgggcggggaaatccggcacgcgctctttcacgcgatc
cgggaagacaaaccggccggcaccgtgacagaagaacaggttgtcgacgcgccggacgag
ggacacttcggctcgacgcgcgagcgtcccggcccgcatggcaccgtgctggtcggcgac
atcaagatcagcaatccgcagcgcgtcattgaccccatcaccggacacacgaagctcgac
ctcgtccgctactacgatgccattgccgaatgggccctgccgtatctgcataaccggccg
ctcacacttgtgcgcgcaccggaaacgctcaatggcgagctgttctttcagaagcacgca
gagcgcatgcgcattccaggcgtcgaggaactccccgtcgatctgaatcccaaccacccg
ccgctgctcgtcgccaacaacatcgacgcgctcgtcggtttggcgcagatgagcgtcgtt
gaactgcattcgtggaacgccgtcgcgcccgatctcgaccaccccgaccgcgtgatattc
gatctcgatccggaccccgcgctcccgtggtccgcgatgctcgaggcggccggccttctg
aaaaccgtgctcgacgaacttgggctgcgctcatttgccaagacgagtggcggcaagggg
tttcacattgttgtgccgctgacgcgccggcaggggtgggacgaggtgaaagacttttcc
cacgcggtcgcccaacatatggcgcgtgtggtaccgcagaagttttcagccatctctgga
ccgcgcaaccgcgtcggcaagattttcatcgactacctgcgtaacggccgtggcgccagc
actgttgcgcccttctccgttcgcgcgcgcggcggcatggcggtgtcgatgccagtctcg
tgggacgaacttaagaacgtcgtgcgcggcgacgaatggacgatgaaaaaagccgtcgca
cggcagcgctcattgaaggccgatccttgggccggcttctggcaggcgcgacagggcata
accagcgctatgcgccgcgccgtcggtgtgaaaaagtga
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