Burkholderia sp. PAMC 28687: AX768_07915
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Entry
AX768_07915 CDS
T05699
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bui
Burkholderia sp. PAMC 28687
Pathway
bui03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AX768_07915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bui03400
]
AX768_07915
Enzymes [BR:
bui01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AX768_07915
DNA repair and recombination proteins [BR:
bui03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AX768_07915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AMM14041
LinkDB
All DBs
Position
1:complement(1729029..1731854)
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AA seq
941 aa
AA seq
DB search
MAGKLETYQRMRRFNQTPEPSGDAAEKAKARRASKKAQASELSFVIQEHDARRLHYDFRL
ELDGTLKSWAVPKGPSLDPSVKRLAVHVEDHPIDYGSFEGAIPEGNYGAGSVIVWDRGTW
EPQSGSIDEARATYEKGKLKFVLHGDKLQGGWTLVRSHMRGNGDKEQWLLIKERDDEARN
EADYDVLLKKPGSVMSDSLGARTKSGEVRERAERKSAAKTTKAAPSPKRPAVKDKGTSPE
RPRPDIVANRSAESLRTLADNPAIQDAVKAKLPATMKPQLATLVDASPSSDDWTYEIKFD
GYRIMIRIDREGGAKPKAAQAQFFTRNGHDWTDKFSRQVKALDKLDVQNAWLDGEAVVLD
DNDLPNFQKLQNAFDTNRPQDIAIYFFDIPFLNGYDLRNVPLIQRRAILQALLEPLDDDV
LRFSADFEFGADDLLKSACDMALEGIIGKRRDSTYTSGRSNSWIKLKCRRRQEFVVGGYS
EPTGSRGEFGALLLGVYDAKGKLQYAGRVGSGFNAGTLRDIKKQLDKREIQKMPFASAPK
ERSRTPVHWVTPELVAECNFAEWTSERIVRQASFVSLRTDKPAKEIVREEPKLTKEVALN
DENEVAAAPAKKSAAKSVSKTNAVAKKAPAKKAPPKKAAAKKTAGAELVAGVKISHPERV
LDPSTGVSKLDLALYYEAVAPWMLPHLKDRPVSLVRAPGDIGGELFFQKHSEKLTIPNVK
QHPGIDPGHPALITIENVGALVGAAQMGTIEMHTWNALAAKLEKPDRMVFDLDPGEGLGW
DRMKEAARLTRELLEELGLASFCKTSGGKGLHVVVPLTPQAGWDEVKGFSQAVAQHMAGA
LPKYFSAKMGKQNRQDKIFVDYLRNNRGSSTVAAYSLRARPGMGASVPIGWDELDATTAG
DQWNIGNLHERLDELDADPWAEYWKTKQRISAAMKKRLDIK
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaaactcgaaacctatcagcgcatgcggcgtttcaaccagacgccggaacct
tccggcgacgctgctgaaaaagctaaagcccgacgcgcatcgaaaaaggcgcaggcgagc
gagctttcgttcgtcattcaggagcacgacgcacgccggcttcactacgacttccggctc
gaactcgacggcacgctgaagtcgtgggccgtgccgaaggggccgagcctggatccatcg
gttaaacggcttgccgtgcatgtcgaggaccatccgatcgattacggttcgttcgaaggc
gcgatccccgaaggcaattacggcgcgggcagcgtaatcgtctgggatcgcgggacgtgg
gagccgcaaagcgggagtatcgatgaagcgcgcgccacgtatgaaaagggcaagctcaag
ttcgtgcttcatggcgacaagctgcagggcggctggacgctcgtgcgcagccatatgcgc
ggcaatggcgacaaagaacagtggttgctgatcaaggaacgcgacgacgaagcccgcaac
gaagccgactacgacgttttgctcaagaagcccggcagtgtgatgagcgattcgcttggc
gcgcgcacgaaaagcggtgaggtgcgcgagcgcgccgagcgcaagagcgcagcgaagacg
acgaaagcggcgccatccccaaagcggcctgccgtcaaggacaagggaacgagtcccgag
cggccgcggccggacatcgtcgcgaaccgcagcgctgaatcgctgcgcaccctcgccgat
aaccccgccatccaggacgcggtcaaggcgaaactccccgccaccatgaaaccgcaactt
gcgacgctcgtggacgcgtcgccttcgagcgatgactggacgtacgagatcaagttcgat
ggatatcggatcatgatccgcatagaccgcgagggcggtgcaaagccaaaggcagcgcaa
gcgcaattctttacgcgcaacggccacgactggaccgacaagttcagccgtcaggtcaag
gcgctcgacaagctcgatgtacagaacgcatggcttgacggcgaagccgtcgtgctggac
gacaacgatctgccgaatttccagaagctgcagaacgccttcgatacaaaccgtccgcaa
gacatcgcgatctatttcttcgatatcccttttctgaatggttacgacctgcgcaacgtg
ccgctgatccagcgccgggcgatcctgcaagcgctactggaaccgctggacgacgacgta
ctgcgcttttcggcggacttcgaattcggcgcggacgatctgttgaaaagtgcgtgcgac
atggcgctggaaggaatcatcggcaagcgtcgcgacagcacttatacgtctgggcgcagc
aatagctggatcaagctgaaatgcaggcggcggcaggagttcgtggtcggcggatactcg
gagcctactggcagccgtggcgagttcggcgccttgctgcttggcgtctacgatgcaaaa
ggcaagctgcaatacgctggccgcgtgggcagcggcttcaatgccggaaccctgcgcgat
atcaagaagcaactcgataaacgcgagattcaaaagatgccgtttgcgtcggcgccaaaa
gagcgcagccgtacgccggtgcattgggtcacgccggagctcgtcgccgagtgcaacttt
gccgagtggacgtctgagcggattgtccggcaggcatcgttcgtcagtttgagaaccgat
aaacccgcgaaagagatcgtgagggaagagccgaaattgacgaaggaggtcgcattgaac
gacgaaaacgaagtcgcagcggcgcccgcgaaaaaatcggcggcgaagtcggtgagcaaa
accaatgccgtcgccaagaaagccccagccaagaaagccccgcccaagaaagccgccgcg
aaaaaaaccgccggcgctgaactggttgccggcgtgaagatcagccatccggagcgcgtg
ctcgatccatcgacgggtgtcagcaagctcgaccttgccctttactacgaagccgtggcg
ccctggatgctgccgcatctgaaggaccgtcccgtgtcgctggttcgagcaccaggggat
atcggcggggagctgttttttcaaaagcacagcgaaaaactcacgatcccgaacgtgaaa
cagcatccgggtatcgatcctggacacccggcgctcatcacgatagaaaacgtcggcgcg
ctcgtcggcgcggcgcagatgggcaccattgaaatgcacacgtggaacgcgcttgcggcg
aagctggagaaacctgaccgcatggtcttcgacctcgatcccggcgaaggactcggctgg
gaccgcatgaaggaagccgcgcgtctcacgcgcgaactgctggaagaactcggccttgcc
tccttttgcaagacgagcggcggcaagggcttgcacgtagtcgtaccgctcacgccgcaa
gccggatgggatgaagtgaagggtttctcgcaagccgtcgcgcagcacatggccggcgcg
ttgccaaaatatttctcggcgaagatgggcaagcagaatcgtcaggacaagatcttcgtc
gattacctgcgcaataaccgcggctcaagcacggtcgccgcatactcattgcgcgcacgg
ccgggaatgggggcgtcggtgccgatcggctgggatgaactcgatgccaccacggccggc
gatcaatggaacatcggcaatctgcatgagcggctggacgaactcgacgccgatccatgg
gccgagtactggaagacgaaacaacgcatctccgctgccatgaaaaagcggctcgatatc
aaataa
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