Burkholderia sp. KJ006: MYA_5305
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Entry
MYA_5305 CDS
T02110
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
buk
Burkholderia sp. KJ006
Pathway
buk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
buk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MYA_5305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
buk03400
]
MYA_5305
Enzymes [BR:
buk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MYA_5305
DNA repair and recombination proteins [BR:
buk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MYA_5305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AFJ89650
UniProt:
I2DYC4
LinkDB
All DBs
Position
3:284079..287072
Genome browser
AA seq
997 aa
AA seq
DB search
MAGKLDPYRRKRHFDATPEPDGAGARRRAKPQPQPDGRAAPRRPLRFVIQEHHARRLHYD
FRLELDGTLKSWAVPKGPSFDPAVKRLAVHVEDHPVEYASFEGQIPAGHYGAGSVVVWDE
GTWTPDGGVAGARSGYRAGKLTFRLDGEKLHGGWALVRSGRQEGRQEQWLLIKERDEAAR
SADEFDVVGERSGSVHDGEGGASSAAGGAGADSHDATARTGGGGPSKRATQTGKRAARSG
ERAARAAKRADDRDRATARAHVRDGDRAAASDGAAARDPGAASIRASTGDADRTPRRTRT
PGRASAGDRDPSTVEGAVRAPLPERIAPQLATLVDAPPADADWRYELKFDGYRILARIAG
KGARRHVKLMTREGRDWTAKLRAQREALAALPVDDAWLDGEAVVLGANGLPDFQALQNAF
GAGQSDDVTLFVFDLPYLDGYDLRDAPLAARRALLEPLVADSDPTRLRFSPDLGDDVASL
IASACDTGLEGLIGKRAESRYRGGRSAAWIKLKCRRRQEFVIGGYTEPSGSRHGFGALLL
GVHDAPPAGKRSRAAAPLRYVGRVGTGFDARALDRLAALLRRHERDTTPFEPAPRERTRT
RVHWVEPTLVAECEFAEWTGDGIVRQAAFIALRDDKPATQIVREMPKHMETEGAMERQQS
TPDAGHERKRASRAADDTGKRKPNARASASARNAREDGDSDAELSARVRITHPERVLDPA
SGTRKIDLARYWQWVAPWLLPDLKGRPVSLVRAPGDITGELFFQKHAERREIPFVTQHPG
LDPGHGALLSLDSVDALLGAAQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWSAMI
EAAQLVRGLLDELGLRSFCKTSGGKGLHVVVPITRHMGWDDVKAFSRALAQHVAGALPER
FTATMGPRHRRGKIFIDYLRNGRGASTIAAYSVRARPGLGVSVPLHWDEVPDTTGGAQWT
IDTLHERLERLKRDPWEGYDDTRQRITAQMRARLDGA
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcaagctcgatccgtatcgccgcaaacgccatttcgacgcgacgcccgaaccg
gatggcgcgggtgcgcggcggcgcgcgaagccgcagccgcagcccgatgggcgtgcggcc
ccacgccggccgttgcgtttcgtgatccaggagcaccatgcgcggcggctgcactacgac
ttccggctcgaactcgacggcacgctgaaatcctgggcggtgccgaagggaccgagcttc
gatccggcggtgaagcgtctggccgtgcacgtcgaggatcatccggtcgaatacgcgtcg
ttcgaagggcagattccggccggccactacggcgccggctcggtcgtcgtgtgggacgaa
ggcacgtggacgcccgacggcggcgtcgcaggcgcgcgcagcggctatcgtgcgggcaag
ctgacgttccggctcgatggcgagaagctgcacggcggctgggcgctggtgcgcagcgga
cggcaggagggacgccaggagcagtggctgctgatcaaggagcgcgacgaagcggcgcgc
agcgccgatgaattcgacgtggtcggcgagcggtcgggcagcgtgcacgacggtgagggc
ggggcatcgtcggcggcaggcggcgcgggcgcggactcgcacgatgcgacggcgcgcacg
ggtggcggcggccctagcaagcgcgccacgcagaccggcaagcgcgccgcgcgaagcggc
gagcgcgcggcacgagccgccaagcgcgccgatgaccgcgatcgcgcgaccgctcgcgca
cacgttcgcgatggcgaccgcgccgcggccagcgacggtgctgccgcacgcgaccccggc
gccgccagtatccgagctagcaccggcgacgccgaccgcacccctcgccgtactcgtact
cccggccgcgcatccgccggcgaccgcgacccctccaccgtcgaaggcgccgtgcgcgcg
ccgctgcccgagcgcatcgcgccgcaactggcgacgctggtcgacgcgccgcccgccgac
gccgactggcgctacgagctgaaattcgacggctaccggatcctcgcgcgcatcgcgggc
aagggcgcgcgtcgccacgtgaagctgatgacgcgcgaaggccgcgactggaccgcgaag
ctgcgcgcgcagcgcgaggcgctcgcggcgctgcccgtcgacgacgcctggctcgacggc
gaggccgtcgtgctcggcgcgaacggcctgcccgacttccaggcgttgcagaacgcgttc
ggcgccgggcagtcggacgacgtcacgctgttcgtcttcgacctgccgtatctcgacggt
tacgacctgcgcgatgcaccgctggccgcgcgccgcgcgctgctcgagccgctcgtcgcc
gacagcgacccgacccggctgcgcttttcccccgatctcggcgacgacgtcgcatcgctg
atcgcgagcgcctgcgacaccggcctcgaagggttgatcggcaagcgggcggaatcgcgc
tatcgcggcggacggtcggcggcctggatcaagctcaaatgtcggcgccggcaggaattc
gtgatcggcggctacaccgagccgtcgggcagccgccacggcttcggcgcgctgctgctc
ggcgtgcacgacgcgccgccggccggcaagcgctcgcgcgcggccgcgccgctgcgctac
gtcggccgcgtcggcaccggcttcgacgcgcgcgcgctcgaccggctcgcggcgctgctg
cgccggcacgagcgcgacacgacgccgttcgagccggcgccgcgcgaacgcacgcgcacg
cgcgtgcactgggtcgagccgacgctcgtcgccgaatgcgaattcgcggaatggaccggc
gacggcatcgtgcggcaggccgcgttcatcgcgttgcgcgacgacaagccggcgacgcag
atcgtccgcgaaatgccgaagcatatggaaacggagggagcgatggagcgacagcagagc
acgcccgacgcgggccatgaacgcaagcgcgcgtcgcgcgccgccgacgatacgggcaag
cgcaagccaaacgcgcgcgcgagcgcgtccgcgcgcaacgcccgtgaggatggcgacagc
gacgcggagctgtccgctcgcgtgcgcattacgcaccccgagcgcgtgctcgacccggcg
agcggcacgcgcaagatcgacctcgcacgctactggcaatgggtggcgccgtggctgctg
cccgacctgaaagggcggcccgtgtcgctcgtgcgcgcaccgggcgacatcaccggcgag
ctgttcttccagaagcacgccgagcgccgcgagattccgttcgtcacgcagcaccccggg
ctcgatcccgggcatggggcgctgctgtcgctcgacagcgtcgatgcgctgctcggcgcg
gcccagatgggcacgatcgaattgcatacgtggaacgcgcacgcatcgaacatcgagcgg
cccgatcgcatcgtgttcgacctcgatcccgatccggcgctgccgtggagcgcgatgatc
gaggccgcgcagctggtgcgagggctgctcgacgagctcggcctgcgctcgttctgcaag
acgagcggcggcaaggggctgcacgtcgtcgtgccgatcacgcggcacatgggctgggac
gacgtgaaggcgttctcgcgcgcgctcgcgcagcacgtggcgggcgcgttgcccgagcgc
ttcaccgcgacgatggggccgcggcaccggcgcggcaagatcttcatcgactacctgcgc
aacggccgcggcgcgagcacgatcgccgcctactcggtgcgcgcacggccggggctgggc
gtatcggtgccgctgcactgggacgaggtgcccgacacgacgggcggcgcgcagtggacc
atcgacacgctgcacgagcgcctcgagcgcttgaagcgcgacccgtgggaaggctacgac
gacacgcgccagcgcatcaccgcgcagatgcgcgcgcggctcgacggggcgtga
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