Caballeronia insecticola: BRPE64_ACDS15530
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Entry
BRPE64_ACDS15530 CDS
T02684
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
buo
Caballeronia insecticola
Pathway
buo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
buo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BRPE64_ACDS15530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
buo03400
]
BRPE64_ACDS15530
Enzymes [BR:
buo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BRPE64_ACDS15530
DNA repair and recombination proteins [BR:
buo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BRPE64_ACDS15530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
HC2
Motif
Other DBs
NCBI-ProteinID:
BAN23307
UniProt:
R4WYK7
LinkDB
All DBs
Position
1:complement(1605624..1608353)
Genome browser
AA seq
909 aa
AA seq
DB search
MAAKLETYQRMRSFDKTPEPSGTAKRGTRTKKAAPQGLSFVIQEHDARRLHYDFRLELDG
TLKSWAVPKGPSLDPSVKRLAVHVEDHPLDYGSFEGEIPEGNYGAGSVIVWDRGTWAPQS
GSFEDAAREYEKGKLKFTLDGEKLHGGWTLVKSHMRGSGDKEQWLLIKERDDDARPEAEY
DILLKKPGSVLSESLGARSKSGAVRERTERRASAKKTTARKSAAKTTKTNGHAHPDIVAT
RSAESLRTLSHEPAIEGALKAKLPASLKPQLATLVDAAPPGDDWAYEIKFDGYRVLARIE
TVKGKRVIRMDTRNGNDWTAKFSKQVKALEQLDIESGWLDGEAVVLDERGLPDFQALQNA
FDVGRPQDIVVYFFDVPYLNGYDLRHVPLVQRRAILKALIEPIDDPVLRYSQDFAFHADD
LLKSACDMALEGIIGKRMDATYVSGRSNSWIKLKCRRRQEFVIGGYSEPSGSRGQFGALL
LGVYDTHGKLQYAGRVGSGFDHATLVAVKKELDRRESKRMPFASEPQERSRTPVHWVKPE
LVAECNFAEWTKERIVRQASFVSLRDDKPARQIVKEEPAAAKKVAKKAATKTATKTAAKK
SVAAKTKSASTEVDGVKISHPERVIDKSTGLRKIDVVEYYASVADWILPHLKDRPVSLVR
APEDIGGELFFQKHSAKLAIPHITQHPDIDPGHPPLLTIESAGALVGTAQMGTVELHTWN
AVASNIEKPDRMVFDLDPGEGVGWARMIEAARLTRELLVELGLESFCKTSGGKGFHVVVP
LVKQAGWDEMKDFSQAVAQHMASTLPKLFSAKMGMQNRKGKIFIDYLRNNRGSSTVAAFS
LRARPGLGASMPIAWEELDDVQSGDQWNIGNVRERLDALKDDPWAGYERARKRLTADMKK
RLGLNNPRK
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaaagctcgaaacctatcagcgcatgcgcagcttcgacaagacgccggagccg
tccggtactgcgaagcggggcacgcgcacgaagaaggccgccccgcaagggctttcgttc
gtgattcaggaacacgatgcgcgccgcctgcactacgacttccggctggaactcgacggc
acgctcaaatcgtgggccgtgccgaaggggccgagcctcgatccgtcggtgaagcggctt
gccgtgcatgtcgaggatcatccgctcgattacggctcgttcgaaggcgagattcccgag
ggcaactatggcgcgggcagcgtcatcgtgtgggatcgcgggacgtgggcgccgcaatcg
ggcagcttcgaggacgccgcgcgcgagtacgagaaaggcaagctcaagttcacgctcgac
ggcgaaaagctgcacggcggctggacgctcgtgaaaagccatatgcgcggcagcggcgac
aaggagcaatggctgctcatcaaggagcgcgacgacgacgcgcggcccgaagccgagtac
gacatcctgttgaagaagccgggcagcgtgctgtcggagtcgcttggcgcgcgctccaag
agcggcgcagtgcgcgagcgtacggagcgccgggcgagtgcgaagaaaactacagcacgc
aagtcagcggcaaagaccacgaagacgaacggccacgcgcatccggatatcgtcgcgacg
cgcagcgcggaatcgctgcgcacgctgtcgcatgaacccgcgatcgaaggcgcgctcaag
gcgaagcttcccgcgagcctcaagccgcagcttgcgacgctcgtcgatgccgcgccgccc
ggcgacgactgggcctatgaaatcaagttcgacggttatcgcgtgctggcccgcatcgag
acggtgaagggcaaacgcgtgatccgcatggacacgcgcaacggcaacgactggaccgcg
aagttctcgaagcaggtgaaggcgcttgaacaactcgacatcgaaagcggctggctcgac
ggcgaagccgtggtgctagacgaacgcggcctgcccgattttcaggcgctgcaaaacgcc
ttcgatgtggggcggccgcaggacatcgtcgtgtatttcttcgatgtgccttatctcaac
ggctacgacctgcgccacgtgccgctcgtgcagcgtcgcgcgattctgaaggcgctgatc
gaaccgatcgacgatccggtactgcgctattcgcaggacttcgcctttcacgccgacgac
ctgctgaaaagcgcatgcgacatggcgctcgaaggcatcatcggcaagcgcatggatgcc
acgtatgtgtcggggcgcagcaattcgtggatcaagctcaagtgtcgtcgccggcaggag
ttcgtgatcggtggctattcggagccgtcgggcagccgtggtcagttcggcgcgctgctg
ctcggcgtctacgacacgcacggcaagctgcaatacgcggggcgcgtcggcagcggcttc
gatcacgcgacgcttgtcgcggtgaagaaggaactcgaccgccgcgaaagcaagcgcatg
ccgtttgcgagcgagcctcaggaacgcagccggacacccgtgcattgggtgaagccggaa
ctcgtggccgaatgcaattttgcggaatggaccaaggagcgcatcgtgcgacaagcatcg
ttcgtcagtctgcgcgacgacaaaccggcgcggcagatcgtgaaggaagagcccgccgcg
gcgaagaaggtggccaagaaagcggccactaagaccgccacgaaaacagcggcgaagaag
agcgtcgccgcaaaaaccaagtcggcttcgaccgaagtcgatggcgtgaagatcagtcat
ccggaacgggtcatcgacaagtccaccgggctgcgcaagatcgatgtcgtcgagtattac
gcatcggtcgccgactggatcttgccgcatctgaaggaccggccggtgtcgctcgtgcgc
gcgcctgaggacatcggcggcgagcttttttttcagaagcacagcgcgaagctcgcgatt
ccgcatatcacgcagcatcccgatatcgatccgggccatccaccgctgcttaccatcgag
tcggccggcgcgctcgtcggcacggcgcaaatgggcaccgtcgaactgcatacgtggaat
gcggttgcgtcgaacatcgaaaagccggatcgcatggtgttcgatctcgatccgggtgag
ggcgtgggctgggcgcgcatgatcgaggccgcgcggcttacgcgagaactgctcgtcgaa
ctgggtctcgaatcgttctgcaagacgagcggcggcaagggctttcacgtggtcgtgccg
ctcgtgaagcaagcgggctgggacgagatgaaggacttttcgcaggccgtcgcgcaacac
atggcgagcaccttgcccaagctcttttccgcgaagatgggcatgcagaatcgcaagggg
aagattttcatcgactatctgcgcaacaaccgcggctcaagcacggtcgcagcgttttcg
ttgcgggcgcgtccgggactcggcgcatccatgccgatcgcctgggaagaactcgacgat
gtgcagagcggcgatcaatggaacatcggcaacgtgcgcgaacggcttgatgcgttgaag
gacgatccgtgggccggctatgaacgcgcgcgcaagcggctcacggccgacatgaagaag
cggctcgggctgaacaacccgcgcaaatga
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