Burkholderia pseudomallei TSV202: X994_4842
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Entry
X994_4842 CDS
T03428
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
but
Burkholderia pseudomallei TSV202
Pathway
but03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
but00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
X994_4842 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
but03400
]
X994_4842 (ligD)
Enzymes [BR:
but01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
X994_4842 (ligD)
DNA repair and recombination proteins [BR:
but03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
X994_4842 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AIV75791
LinkDB
All DBs
Position
2:1395324..1398794
Genome browser
AA seq
1156 aa
AA seq
DB search
MAGKLSVYRSRRRFGETPEPEGARRSPRRTKGAGRAGDESKRRARGDAAASSHGERAARR
GRAQQPAPARGRSALHYVIQEHHARRLHYDFRLELDGTLKSWAIPKGPSLDPSVKRLAVH
VEDHPLEYAAFEGEIPEGHYGAGSVIVWDRGAWTPAGGVAAARAGYRAGKLSFTLDGDKL
HGGWALVRSRGLRDSGGKHEQWLLIKERDGDARDEADYDVLRARPGSVLGGARSARARRG
RAAEPTERDAAAPKRARASVPKGRAEAKTSGRAPRTVSNGTAGAGKGASKRASKREGTNT
GNGARSGKGNGNGKGAGKGVATPRRKRAAAPQSSDVDSADTDSPAARGLALPAGLAARFG
LSGAKRAALPRTLRPQLATLVDAPPPGKDWLYEAKFDGYRVLIRIDRGAASRPIAVYTRE
GLDWSAKFAAQLDALARLPVDRGWLDGEAVVLDRAGVPDFQALQNALGAGRSNDVTLFLF
DVPFLNGFDLRGVPLERRRALLAALVAAHASDVLRYSESLAFEAADLLTGACDAGLEGLI
GKRRDGRYVEGRSRSWIKLKCRRRQEFVIGGYTEPAGRRSGFGALLLGVYARAPGDEGER
RTRGAAETRDERRRASHASHASRTSRTSRAPDAGAARAPQARPLALRYVGRVGTGFGERT
LRALARTLREHETGRMPFADVPRERSGTPVHWVKPVLVAECEFAEWTGDGIVRQASFVGL
REDKPARTIVREQPQSMETEAMNEHADEHTDEHTDARAERRTGGRTRRKARDGGARDAPA
LARHPKRGDAGSSARKGARDGEAGKRAAAGSSPSSSPSSSTSTSISASGRTRGGGRSASR
DRAGDADEGANDHAPRERAGAPKVAGVRVSHPGRVIDPHTGTRKLDLVEYWEWIAPWLLP
HLKGRPVSLVRAPADIGGELFFQKHADKLEIPNVALHAGLDPGHEALITIDDVKGLVGAA
QMGTIELHTWNAHVSNIEKPDRAVFDLDPDPSLDWRAVIEAAQLTRALLDELGLVSFCKT
SGGKGLHVVVPLARHAGWDDVKAFAHAVARHMAATLPERFTATMGPRNRKGKIFVDYLRN
NRGASTIAAYSVRARPGLGVSVPIAWDELPDTTGAAQWTLANLHERLDALKHDPWRAYAH
VRQRVTAALRKRLSDG
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaaactcagcgtgtaccgcagcaggcggcgcttcggcgaaacgccggagccc
gagggcgcgcggcggtcgccgcgccgcacgaaaggcgcgggccgcgcgggcgacgaatcg
aagcggcgcgcgcgcggcgatgcggcggcgtcgagccacggcgagcgcgccgctcgccgt
ggccgcgcgcagcagccggcgccggcgcgcggcaggtccgcgcttcattacgtgatccag
gagcatcacgcgcgccgcttgcattacgactttcgtctcgaactcgatggcacgctcaaa
tcgtgggcgatcccgaaagggccgagcctcgatccttcggtcaagcggctcgcggtgcac
gtcgaggatcatccgctcgaatacgcggcgttcgagggcgagattccggaaggccattac
ggcgcgggctcggtgattgtctgggatcgcggcgcatggacgcccgccggtggcgtcgcc
gccgcgcgcgccggctatcgcgcgggcaagctgagcttcacgctcgacggggacaagctg
cacggcggctgggcgctcgtgcgcagccgcgggctgcgtgacagcggcggcaagcacgag
caatggctgctgatcaaggaacgcgacggcgacgcgcgcgacgaagcggactacgacgtg
ctgcgcgcacggccgggcagcgtgctcggcggcgcgcggtccgcgcgggcgaggcgcggg
cgcgcggccgagccgacggagcgcgacgccgccgcgccgaagcgggcgcgcgcttcagtg
ccgaaagggcgcgccgaagcgaagacgagcgggcgtgcgccgcgcaccgtgtcgaacggg
actgcgggcgcgggtaagggcgcaagcaagcgtgcaagcaagcgcgagggcacgaatacc
ggaaacggcgcgagaagcggcaagggcaacggcaacggcaagggcgcgggcaagggcgtg
gccacaccgcgccgcaaacgcgccgccgcgccgcagtcgtccgacgtcgattcggccgat
accgattcacccgcggcgcgcggcctcgcgttgcccgccgggcttgccgcgcgcttcggc
ctgagcggcgcgaagcgcgcggcgctgccgcgcacgttgcggccgcaactggcgacgctc
gtcgacgcgccgccgcccggcaaagattggctatacgaagcgaagttcgacggctaccgc
gtgctgatccggatcgatcgcggcgcggcgtcccgcccgattgccgtctacacgcgcgag
gggctcgactggagcgcgaaattcgccgcgcagctcgacgcgctcgcgcgcctgccggtc
gaccggggctggctcgacggcgaggcggtcgtactcgatcgcgcgggcgtgccggatttc
caggcgctgcagaacgcgctcggcgccggacgctcgaacgatgtcacgctgttcctgttc
gacgtgccgttcctgaacggcttcgacctgcgcggcgtgccgctcgaacggcggcgcgcg
ctgctcgccgcgctcgtcgccgcgcatgcgagcgacgtgctgcgctactcggagagcctc
gcgttcgaggccgccgatctgctgacgggcgcgtgcgacgcggggctcgaagggttgatc
ggcaagcggcgcgatggccggtacgtcgaggggcgctcgagatcgtggatcaagctgaag
tgccggcgcaggcaggagttcgtgattggcggctacacggagccggccggacggcgcagc
ggattcggcgcgttgctgctcggcgtgtacgcccgggcgccgggcgacgagggcgaacga
aggacgcgcggcgcggccgaaacgcgcgacgagcggcgtcgtgcatcccacgcatcccac
gcatcccgcacatcccgcacatcccgcgcgcccgatgccggcgcggcgcgcgcaccgcag
gcgcggccgctcgcgttgcgctacgtcggccgcgtcggcaccggcttcggcgagcgcacg
cttcgcgcgctcgcgcggacgctgcgcgagcacgagaccgggcggatgccgttcgcggac
gtgccgcgcgagcgcagcggcacgccggttcactgggtgaagcccgtgctcgtcgccgaa
tgcgaattcgcggaatggacgggcgacggcatcgtccggcaggcgtcgttcgtcgggctg
cgcgaagacaagccggcgcgcacgatcgttcgcgagcaaccgcaatccatggagacggaa
gccatgaatgaacacgctgacgaacatacggatgaacataccgatgcacgcgccgaacgt
cgcaccggcggacgcacgcggcgcaaagcacgtgacggcggcgcgcgcgacgcgccggcg
cttgcccgccatccaaagcgcggcgatgcgggatcgtccgcgcgcaagggcgcgcgggac
ggggaggcgggcaagcgcgccgccgcgggatcgtcgccttcgtcttcaccgtcgagttcg
acttcgacttcgatttcggcgtcagggcgcacgcgcgggggcggtcgttccgcctcgcgc
gatcgagccggcgatgcggacgaaggcgcgaacgatcacgcgccgcgcgagcgcgccggc
gcgccgaaggtggcgggcgtgcgcgtctcgcatcccggccgcgtgatcgatccgcacacg
ggcacgcgcaagctcgacctcgtcgaatactgggaatggatcgcgccgtggctgctgccg
catctgaagggccggccggtgtcgctcgtgcgcgcgcccgccgacatcggcggcgagctg
ttcttccagaagcacgcggacaagctggagattccgaacgtcgcgctgcacgcggggctc
gacccgggccatgaggcgctcatcacgatcgacgatgtgaaggggctcgtcggcgccgcg
caaatgggcacgatcgagctgcacacgtggaacgcgcacgtgtcgaacatcgagaagccg
gaccgcgcggtgttcgacctcgacccggacccgtcgctcgactggcgcgcggtgatcgag
gccgcgcagctcacgcgcgcgctgctggacgagctcggcctcgtgtcgttctgcaagacg
agcggcggcaaggggctgcacgtcgtcgtgccgctcgcgcgccatgcgggctgggacgac
gtgaaggcgttcgcgcacgcggtggcgcggcacatggcggcgaccctgcccgagcgcttc
accgcgacgatggggccgcgcaaccggaagggcaagatcttcgtcgactatctgcgcaac
aaccgcggcgcgagcacgatcgccgcgtactcggtgcgcgcgaggccggggcttggcgta
tcggtgccgatcgcatgggacgaactgccggatacgacgggcgccgcgcaatggacgctc
gcgaacctgcacgagcgtctcgacgcgctgaagcacgacccgtggcgcgcctatgcgcat
gtgcggcaacgcgtgacggcggcgttgcggaagcggctgagcgatgggtag
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