KEGG   Burkholderia sp. OLGA172: AYM40_11275Help
Entry
AYM40_11275       CDS       T05111                                 

Definition
(GenBank) DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
buz  Burkholderia sp. OLGA172
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:buz00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    AYM40_11275
Enzymes [BR:buz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AYM40_11275
DNA repair and recombination proteins [BR:buz03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AYM40_11275
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
1:complement(2599699..2602506)
Genome map
AA seq 935 aa AA seqDB search
MNDRLDPYNRKRRFDETPEPSGAAARKQAGRGTAARDAARASNGALSYVIQEHDARRLHY
DFRLELNGTLLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGSFEGEIPPGNYGAGTVIVWD
RGTWEPVGGAAEAARSYQAGKLKFRLFGEKLHGGWTLVRSRMRGSGDKEQWLLIKERDDE
ARKESEYDVLKERPGSVLDGRVPTGRGAGSTRRATGKTASGSTHGSASAKRVASATQAFA
ASPSIKGAVKAALPATFKPQLATLVDAAPPGDEWVYEIKFDGYRVLVRIDRKAKGRAVKV
FTRAGNDWTAKFGKQVKALEQLDVESAWLDGEAVVLDENGVPGFQALQNAFDSNRPQDIV
IYLFDIPFLNGYDLRGVPLEQRRTILRALIDGNDEDGHDDSVLRFSNDFAFSAGELLKSA
CDMALEGIIGKRRDSGYASGRSSAWIKLKCRRRQEFVIGGYSEPSGSRAAFGALLLGVYD
DTGKLQYAGRVGTGFDAASLRSVKKELGAHEIEHMPFAGAPRERSRTAVHWVEPVLVCEC
NFAEWTSDGIVRQASFVSLRNDKPARQIIREAARKGADVQQQTDTASDDVPKKRTTRKAV
EALAAEPAKKSATKSKTAATPAEVAGVRVSHPDRIIDKRTGTRKIDLVRYYEAVADWMLP
YLRDRPVSLVRAPEDIGGELFFQRHSQKLSIPNVTQHPGLDPGHPPLITVDTLKAVVGAA
QMGTVEFHTWNAVVSNIEKPDRMVFDLDPDASLAWERMIEAAQLTRSLLEELGLTSFCKT
SGGKGFHVVVPLAKHAGWDEVKAFSQAVAQHMAATLPRYFSAKMGAQNRKRKIFVDYLRN
NRGSSTVAAFSARARPGLGVSVPLSWDEVATTTSGDQWTIENVHERLQDLKRDPWAGYAK
TRQRITAAMKKRLDEAHTNVNSDGEAPGGGRRGTH
NT seq 2808 nt NT seq  +upstreamnt  +downstreamnt
atgaacgacaggctcgatccctacaaccgcaagcgccgcttcgacgaaacaccggagccg
tcgggggcggctgcgcgtaagcaagccggccgcgggacggcggcgcgtgacgcggcgcgc
gcatcgaatggagcgctgtcgtatgtgatccaggagcacgacgcgcggcgcttgcattac
gacttccggctcgaactgaacggcacgttactgtcgtgggcggtgcccaaggggccgagc
ctcgacccgtcggtgaaacggcttgcggtgcatgtggaagatcatcctgtcgaatatggc
tcgttcgaaggcgagatcccgcctggcaactacggcgcgggaacggtgatcgtgtgggac
cgtggcacgtgggagccggtcggcggcgcggcggaggcggccagatcgtatcaagcgggc
aagctcaaattccggctcttcggcgaaaagctgcacggcggctggacgctggtacgcagt
cgtatgcgtggcagcggcgacaaggagcagtggctgctgatcaaggagcgtgacgacgaa
gcccgcaaggagagcgaatacgacgtcctgaaggagcgcccaggcagtgtgctggatggc
agggtgccgaccggcaggggcgcagggtctacgaggcgcgcgacgggaaagaccgcgagc
gggtctacacacgggagcgcaagcgcaaagagggtggcgagcgcaacgcaggcgtttgct
gcatccccctcgatcaaaggcgcggtcaaagccgcgttgcccgctaccttcaagccgcaa
ctggcgacgctcgtcgacgccgcgccacctggcgatgaatgggtgtacgaaatcaagttc
gacggctatcgcgtgctggtccgcatcgatcgaaaggcaaagggccgcgcggtcaaggtg
ttcacgcgcgcgggcaacgattggaccgcgaagttcggcaagcaggtgaaggcgcttgaa
caactcgacgtcgaaagcgcgtggcttgacggcgaagccgtggtgctcgatgaaaacggc
gtgccaggttttcaggcgctgcaaaacgcgttcgactcgaaccgcccgcaggacattgtc
atctatctgttcgacattccgtttctgaacggctatgacttgcgcggcgtgccgctcgaa
caacgccgcacgatcttgcgtgcgctgattgacgggaacgacgaggatgggcacgacgac
agcgttctgcgcttctccaacgacttcgcgttcagtgcaggcgaactattgaagagcgcg
tgcgatatggcgctcgaagggatcatcggcaaacggcgtgatagcggttacgcatcggga
cgctcgtccgcgtggatcaaattgaagtgccggcggcgccaggagttcgtgatcggcggc
tattcggagccgtccggcagccgcgcggcgttcggtgcgctgttgcttggcgtctacgac
gacaccggcaaactgcaatacgccggacgggtcggcacgggtttcgacgccgcgtcgcta
cgctcagtcaagaaggaactcggcgcgcacgagatcgagcacatgccgttcgccggcgcg
ccgcgcgagcgcagccgcacggcggtgcattgggtcgaaccggtactcgtctgcgaatgc
aatttcgccgaatggacgagcgatggcatcgtgcgacaggcgtcgttcgtgagtctgcgc
aacgacaaaccggcgcggcagatcatcagggaagcagcccgcaaaggagccgacgtgcaa
cagcaaaccgataccgcttccgacgacgtgccgaaaaagcgcacgacgagaaaggccgtc
gaggctctcgcagccgagcccgctaaaaaaagcgcgacgaaatcgaaaactgccgcgacg
ccggccgaagtcgccggcgtccgcgtatcccatcccgaccgcatcatcgacaagcgcacc
ggcacgcgcaaaatcgatctcgtgcggtactacgaagcggtcgccgactggatgctgcca
tatctgcgggaccggccggtgtcgctggtgcgcgcgcccgaggacatcggcggcgagctg
tttttccagaggcacagtcagaagctgtcgattcccaacgtcacgcaacatcccggactg
gacccggggcatccgccgctgatcaccgtcgatacgctgaaggctgtggtcggcgccgcg
caaatgggcaccgtcgaatttcatacatggaatgccgtggtgtcgaacatagaaaaaccc
gatcgcatggtgttcgatctcgaccccgatgcgtcgctcgcctgggagcggatgatcgag
gctgcgcaactgacgcgctcgctgctcgaggaacttggcctgacctcgttctgcaagacg
agcggaggtaaagggttccacgtggtggtgccgctcgcgaagcacgccggctgggacgaa
gtgaaagcgttttcgcaagcggtcgcgcagcatatggcggcaacgctgcccaggtacttt
agcgcgaagatgggcgcgcagaatcgcaagcggaagatcttcgtcgattacctgcgcaac
aaccgtggctcgagcacggtggccgcattttcggcacgcgccaggccgggcctgggcgtt
tcggtacccctctcgtgggacgaagtcgccaccacgacgagcggcgatcaatggaccatc
gaaaatgtgcacgagcgtctccaggatcttaagcgcgacccgtgggcgggctacgcgaag
acgcggcagcgcattaccgcggcaatgaaaaaacgtctggatgaagcgcacacgaacgtc
aattccgatggcgaggcaccgggtggcggccgccgcggcacgcactga

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