Paraburkholderia phytofirmans OLGA172: AYM40_11275
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Entry
AYM40_11275 CDS
T05111
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
buz
Paraburkholderia phytofirmans OLGA172
Pathway
buz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
buz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AYM40_11275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
buz03400
]
AYM40_11275
Enzymes [BR:
buz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AYM40_11275
DNA repair and recombination proteins [BR:
buz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AYM40_11275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANB72883
UniProt:
A0A161I251
LinkDB
All DBs
Position
1:complement(2599699..2602506)
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AA seq
935 aa
AA seq
DB search
MNDRLDPYNRKRRFDETPEPSGAAARKQAGRGTAARDAARASNGALSYVIQEHDARRLHY
DFRLELNGTLLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGSFEGEIPPGNYGAGTVIVWD
RGTWEPVGGAAEAARSYQAGKLKFRLFGEKLHGGWTLVRSRMRGSGDKEQWLLIKERDDE
ARKESEYDVLKERPGSVLDGRVPTGRGAGSTRRATGKTASGSTHGSASAKRVASATQAFA
ASPSIKGAVKAALPATFKPQLATLVDAAPPGDEWVYEIKFDGYRVLVRIDRKAKGRAVKV
FTRAGNDWTAKFGKQVKALEQLDVESAWLDGEAVVLDENGVPGFQALQNAFDSNRPQDIV
IYLFDIPFLNGYDLRGVPLEQRRTILRALIDGNDEDGHDDSVLRFSNDFAFSAGELLKSA
CDMALEGIIGKRRDSGYASGRSSAWIKLKCRRRQEFVIGGYSEPSGSRAAFGALLLGVYD
DTGKLQYAGRVGTGFDAASLRSVKKELGAHEIEHMPFAGAPRERSRTAVHWVEPVLVCEC
NFAEWTSDGIVRQASFVSLRNDKPARQIIREAARKGADVQQQTDTASDDVPKKRTTRKAV
EALAAEPAKKSATKSKTAATPAEVAGVRVSHPDRIIDKRTGTRKIDLVRYYEAVADWMLP
YLRDRPVSLVRAPEDIGGELFFQRHSQKLSIPNVTQHPGLDPGHPPLITVDTLKAVVGAA
QMGTVEFHTWNAVVSNIEKPDRMVFDLDPDASLAWERMIEAAQLTRSLLEELGLTSFCKT
SGGKGFHVVVPLAKHAGWDEVKAFSQAVAQHMAATLPRYFSAKMGAQNRKRKIFVDYLRN
NRGSSTVAAFSARARPGLGVSVPLSWDEVATTTSGDQWTIENVHERLQDLKRDPWAGYAK
TRQRITAAMKKRLDEAHTNVNSDGEAPGGGRRGTH
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacaggctcgatccctacaaccgcaagcgccgcttcgacgaaacaccggagccg
tcgggggcggctgcgcgtaagcaagccggccgcgggacggcggcgcgtgacgcggcgcgc
gcatcgaatggagcgctgtcgtatgtgatccaggagcacgacgcgcggcgcttgcattac
gacttccggctcgaactgaacggcacgttactgtcgtgggcggtgcccaaggggccgagc
ctcgacccgtcggtgaaacggcttgcggtgcatgtggaagatcatcctgtcgaatatggc
tcgttcgaaggcgagatcccgcctggcaactacggcgcgggaacggtgatcgtgtgggac
cgtggcacgtgggagccggtcggcggcgcggcggaggcggccagatcgtatcaagcgggc
aagctcaaattccggctcttcggcgaaaagctgcacggcggctggacgctggtacgcagt
cgtatgcgtggcagcggcgacaaggagcagtggctgctgatcaaggagcgtgacgacgaa
gcccgcaaggagagcgaatacgacgtcctgaaggagcgcccaggcagtgtgctggatggc
agggtgccgaccggcaggggcgcagggtctacgaggcgcgcgacgggaaagaccgcgagc
gggtctacacacgggagcgcaagcgcaaagagggtggcgagcgcaacgcaggcgtttgct
gcatccccctcgatcaaaggcgcggtcaaagccgcgttgcccgctaccttcaagccgcaa
ctggcgacgctcgtcgacgccgcgccacctggcgatgaatgggtgtacgaaatcaagttc
gacggctatcgcgtgctggtccgcatcgatcgaaaggcaaagggccgcgcggtcaaggtg
ttcacgcgcgcgggcaacgattggaccgcgaagttcggcaagcaggtgaaggcgcttgaa
caactcgacgtcgaaagcgcgtggcttgacggcgaagccgtggtgctcgatgaaaacggc
gtgccaggttttcaggcgctgcaaaacgcgttcgactcgaaccgcccgcaggacattgtc
atctatctgttcgacattccgtttctgaacggctatgacttgcgcggcgtgccgctcgaa
caacgccgcacgatcttgcgtgcgctgattgacgggaacgacgaggatgggcacgacgac
agcgttctgcgcttctccaacgacttcgcgttcagtgcaggcgaactattgaagagcgcg
tgcgatatggcgctcgaagggatcatcggcaaacggcgtgatagcggttacgcatcggga
cgctcgtccgcgtggatcaaattgaagtgccggcggcgccaggagttcgtgatcggcggc
tattcggagccgtccggcagccgcgcggcgttcggtgcgctgttgcttggcgtctacgac
gacaccggcaaactgcaatacgccggacgggtcggcacgggtttcgacgccgcgtcgcta
cgctcagtcaagaaggaactcggcgcgcacgagatcgagcacatgccgttcgccggcgcg
ccgcgcgagcgcagccgcacggcggtgcattgggtcgaaccggtactcgtctgcgaatgc
aatttcgccgaatggacgagcgatggcatcgtgcgacaggcgtcgttcgtgagtctgcgc
aacgacaaaccggcgcggcagatcatcagggaagcagcccgcaaaggagccgacgtgcaa
cagcaaaccgataccgcttccgacgacgtgccgaaaaagcgcacgacgagaaaggccgtc
gaggctctcgcagccgagcccgctaaaaaaagcgcgacgaaatcgaaaactgccgcgacg
ccggccgaagtcgccggcgtccgcgtatcccatcccgaccgcatcatcgacaagcgcacc
ggcacgcgcaaaatcgatctcgtgcggtactacgaagcggtcgccgactggatgctgcca
tatctgcgggaccggccggtgtcgctggtgcgcgcgcccgaggacatcggcggcgagctg
tttttccagaggcacagtcagaagctgtcgattcccaacgtcacgcaacatcccggactg
gacccggggcatccgccgctgatcaccgtcgatacgctgaaggctgtggtcggcgccgcg
caaatgggcaccgtcgaatttcatacatggaatgccgtggtgtcgaacatagaaaaaccc
gatcgcatggtgttcgatctcgaccccgatgcgtcgctcgcctgggagcggatgatcgag
gctgcgcaactgacgcgctcgctgctcgaggaacttggcctgacctcgttctgcaagacg
agcggaggtaaagggttccacgtggtggtgccgctcgcgaagcacgccggctgggacgaa
gtgaaagcgttttcgcaagcggtcgcgcagcatatggcggcaacgctgcccaggtacttt
agcgcgaagatgggcgcgcagaatcgcaagcggaagatcttcgtcgattacctgcgcaac
aaccgtggctcgagcacggtggccgcattttcggcacgcgccaggccgggcctgggcgtt
tcggtacccctctcgtgggacgaagtcgccaccacgacgagcggcgatcaatggaccatc
gaaaatgtgcacgagcgtctccaggatcttaagcgcgacccgtgggcgggctacgcgaag
acgcggcagcgcattaccgcggcaatgaaaaaacgtctggatgaagcgcacacgaacgtc
aattccgatggcgaggcaccgggtggcggccgccgcggcacgcactga
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