Bombus vancouverensis nearcticus: 117154635
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Entry
117154635 CDS
T07628
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117154635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bvan03041
]
117154635
Enzymes [BR:
bvan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117154635
Spliceosome [BR:
bvan03041
]
Complex C
Other components
Step II factors
117154635
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
AAA_16
FMP27-BLTP2_C
Motif
Other DBs
NCBI-GeneID:
117154635
NCBI-ProteinID:
XP_033185686
LinkDB
All DBs
Position
Unknown
AA seq
1197 aa
AA seq
DB search
MDEVAKLEHLSLVSKICTELENHLGLNDKDLAEFIIHLAEKNDTFDKFKKVLIENGAEFS
ESFMANLLRIIQHMKPTKLEEKSLKPPTKQDELAQKFPALALPNEEPKIVDEKELKDDDI
VSSAMASLEELAPSKKSNKEDSKKENQSIDNNDKKNKHTRRSRSRDRRRHRSRSSGRRDR
RHRSRSRSRSRDRSRSRDRRRHRSRDRKRSRSRDRKFHRDKYSNKLDRSRSRSVEELSMD
PEVGKIYSGKVANIVPFGCFVQLEGLKRRWEGLVHISQLRREGRVASASDVVSRGQKVLV
KVLNIGGQKVSLSMKDVDQETGRDLNPVVAVTKTEEDEKHLRNPDRPTSLLELQGNWDED
ETYSRKRVQRLSSPEKWEIKQMLAASCIDRSELPEFDTETGILPREDDEEEDVEIELVEE
EPPFLHGHGRALGDLSPVRIVKNPDGSLAQAAMMQSALAKERREQKMLQREQEMDSVPTG
LNKNWIDPLPEAESRTLAANMRGIGLQTQDLPEWKKHVIGGKKSSFGKKTNLTLLEQRQS
LPIYKLRDDLVKAVTDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAM
SVAKRVAEEFGCRLGQEVGYTIRFEDCTGPETNIKYMTDGMLLRECLMDLDLKTYSVIML
DEAHERTIHTDVLFGLLKQAVGRRPDLKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFEV
EVMYTKEPETDYLDAALITVMQIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPDV
PELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKV
YNSKTGMDSLIVTPISQAAAKQRAGRAGRTGPGKCYRLYTERAYRDEMLPTPVPEIQRTN
LATTVLQLKTMGINDLLHFDFMDAPPVESLIMALESLHSLSALDNEGLLTRLGRRMAEFP
LEPNLSKMLIMSVHLQCSDEILTIVSMLSVQNVFYRPKDKQALADQKKAKFNQPEGDHLT
LLAVYNSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAGKNTVRIQ
KAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMRE
VTTIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVRRRRN
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagttgcaaagctcgaacacctgtctttggtttcgaaaatatgcacggaattg
gaaaatcacttagggctaaatgacaaagatttggctgaattcataatccatttggcagag
aaaaatgatacatttgataaatttaaaaaagttctcattgaaaatggtgctgaattttct
gaatcttttatggccaatttgctaagaataatacaacatatgaagccaactaaattggag
gagaaatcattgaaacctccgacaaagcaagatgaactagctcaaaaattccctgcccta
gcactgccaaatgaggaaccaaaaattgtggatgaaaaagaactcaaagacgatgatata
gtcagcagtgctatggcaagtttggaggaactagcaccatcaaaaaagtctaacaaagaa
gatagcaagaaagagaaccaatcaatcgataataatgataagaagaacaaacacacaaga
agaagtagatcaagagatagaagaagacacagatcacgttcatcaggtcgcagagacaga
aggcataggtctagatctcgttcaaggtcacgagatcgttcaagatccagagatagaaga
cgtcacaggtccagagatcgtaaaagatctagatcacgagacagaaaatttcatagggac
aaatattccaataaacttgatcgatctagatcgcgatctgtagaagaactttccatggat
ccagaagtaggcaagatctattcaggcaaagtagctaatatcgtaccttttggttgtttt
gttcaattggagggtttgaaacgaaggtgggaagggcttgttcatatctcacaattaaga
agggaaggaagagtcgccagtgctagcgatgtagtatctaggggtcagaaggtgctcgtg
aaagtcctcaatattggtggacaaaaggtttctttaagtatgaaggatgttgatcaggaa
accggcagggatctaaatcctgttgtggctgttaccaaaactgaagaagatgagaaacat
ttgagaaatccagataggcctacttccttgttagaactccagggtaattgggacgaggac
gaaacttattctagaaaacgtgtgcagagattgtcttctccagaaaagtgggaaattaaa
caaatgcttgccgcatcttgtatcgataggagtgaattgccagaattcgataccgaaacg
ggaatcctcccacgagaagacgatgaagaagaagacgttgaaatagagttagtggaagaa
gagccaccatttttacatggccacggaagagctcttggagacttaagtcctgttcgtata
gtaaaaaatcctgatggttctttagcgcaagctgcaatgatgcagagtgctttagcaaag
gaaaggagggaacaaaaaatgttgcaaagagaacaggaaatggattctgttccaacagga
ctgaacaaaaattggattgaccctctaccagaagctgaaagtagaacattagctgcgaac
atgcgtggaatcggccttcaaacacaggatttgcccgagtggaagaaacacgtgatagga
ggaaaaaagtcttcctttggaaagaaaacaaatttaactcttcttgaacagcgtcagagc
ttaccaatatataaactcagggatgatttagttaaagctgtgacggataatcaaatttta
atcgtaattggagaaacaggatcaggaaagaccacgcaaattacacagtatttagcagaa
gcagggttcacagcccgtggaaagatcggctgtactcaacctagaagagtggctgccatg
tcagttgccaaaagagtggcggaagaattcggttgtcgtttaggacaagaagttggctac
acgattcgttttgaagactgtactggtccagaaaccaacataaagtatatgactgatggt
atgttgctaagagaatgtctcatggatttggatttgaagacatactctgtaattatgttg
gatgaggcacatgaacgtaccattcacacggacgttctttttggattgctgaaacaagct
gtagggaggaggccagatttaaagctaatcgttacaagtgcaactttggatgctgtcaaa
ttttcacaatacttttttgaagcaccgatcttcactattcctggtagaacattcgaagtt
gaagtcatgtacaccaaagaaccagaaacagactatctggatgccgcactgataacagta
atgcagatacatttgagagaacctccaggagacatacttctattcctaactggtcaagaa
gaaatcgacacagcttgtgaaattttatacgaacgtatgaaatctttaggtcctgatgtt
ccagagttaatcattttgcccgtgtattcggcgcttccttcggagatgcagacgagaata
tttgaaccagctccacctggttccagaaaagtggtaatagccaccaatatagcggaaact
agtttgactatcgatggaatttattacgtagttgatccaggatttgtgaaacagaaggtc
tataattctaaaactggaatggatagtcttatagtaacaccaataagtcaagcagctgcg
aaacaaagagcagggagggctggcagaactggtccaggaaaatgttatagactttatact
gaaagggcttatagggacgaaatgcttccgacgccggttccagaaatccaacgtactaat
ttagcaaccacggtattacaattaaagactatgggcatcaatgatctattacactttgat
tttatggatgctccacctgtcgaatcgctgattatggctttggaatctctacacagctta
agtgcattagataacgaaggtttgttaaccagattaggaagaaggatggcagagtttcct
ctagaacctaatttatctaaaatgcttattatgagcgtacatcttcaatgctctgatgag
atattgaccatcgtcagcatgttatctgttcagaacgtcttctacagaccgaaagataag
caagctttagcagatcaaaagaaagcaaaattcaaccaaccggagggcgatcatttaact
ctgttggcagtttataactcctggagaaataataaatttagtaatgcatggtgttatgaa
aattttgtgcaaattagaactttaaaacgcgctcaggatgttcggaaacaactattaggt
ataatggacagacacaaattggacgtagtatctgcgggtaaaaacactgtaagaattcag
aaagctgtttgttctggtttcttcagaaacgccgcaaagaaagatcctcaagaaggatat
agaaccttggtagatagccaagttgtctacattcatccaagtagcgcgttatttaacaga
caaccggaatgggtaatttatcatgaattggtccaaactacaaaagaatacatgagggaa
gtgacaactatagatccaaaatggttagtagagtttgcgccagcatttttcaaatttagc
gatccgaccaaacttagcaagtttaagaagaaccaaagattggaaccactttataataag
tacgaagaaccgaacgcttggcgaatatcaagggttcgaagaagacgtaattaa
DBGET
integrated database retrieval system
