Burkholderia vietnamiensis LMG 10929: AK36_2336
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Entry
AK36_2336 CDS
T03893
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bve
Burkholderia vietnamiensis LMG 10929
Pathway
bve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AK36_2336 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bve03019
]
AK36_2336 (rnr)
03016 Transfer RNA biogenesis [BR:
bve03016
]
AK36_2336 (rnr)
Enzymes [BR:
bve01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AK36_2336 (rnr)
Messenger RNA biogenesis [BR:
bve03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AK36_2336 (rnr)
Transfer RNA biogenesis [BR:
bve03016
]
Prokaryotic type
tRNA degradation factors
AK36_2336 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
HTH_12
CSD
Motif
Other DBs
NCBI-ProteinID:
AJY06687
LinkDB
All DBs
Position
I:complement(2542427..2544910)
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AA seq
827 aa
AA seq
DB search
MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNGEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRIGHDILITQNVKKAKVGQVV
VVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSQPALDEAAALPDKV
RPADLRFRVDLRDVPLVTIDGEDARDFDDAVYCEPTKVGRGDGFRLIVAIADVSHYVQPG
NGLDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMVITARGEIKAYQ
FYPAVIHSAARLTYTEVAAVLSNTKGPEAARRADLLPHLQDLYGVYKALFAARQKRGAID
FDTTETYIVCNSQGKIEQIVPRQRNDAHKLIEECMLAANVCAADFLKRNKHAGLYRVHAG
PTPEKLENLRAFLRGMGLTLGGGEKPHASDYAALMAQIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILSGKKYTPKAPEGFELNTALSPR
ARAMQQADDETRGRSRPNTAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTSFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRDTPVKAPRPAPQAPAAGGNGNANANGSDRGGPRLRMLPAAD
EAAPRRKQAASAPTAAVKEARAARAAKKKGGAAAKTPAKKAHPRKKY
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaatacccgtaccccattccgagccgtgaagaaattctgggcgtgctgcgcacg
agcgacgcgccgctggccgccaacgacatcgccgaggcgctgtcgatcaagcgccaggag
cgcgaggggttcttccggcgtgtcgccgcgatggaacgcgacggccagatccgcctcgac
aagcgcgggcactatcagctcacccacccatcgaacttcgttgccggccgcgtgcagggg
catcgcgacggctacggcttcgtgatccgtgacgacggtcaggacgacctgttcctgccc
aacggcgaaatgcagaaggtgatgcacaacgatcgcgtgctcgcgcgcatcgtcggctac
gatcgccgtggccgcccggaaggtcacgtcgtcgaagtgaccgagcgcgcgaacaagcgc
gtgatcggccggctgctcaacgagaacggcgcgctgatcgtcgcaccggaagacaagcgc
atcggtcacgacatcctgatcacgcagaacgtgaagaaggcgaaggtcgggcaggtggtc
gtcgtcgagctgaccgacttcccgagccgccattcgcagccgctcggccgcgtcgtcgaa
gtgctcggcgacatcgacgatccgggcatggaaatcgagatcgcggtgcgcaagtacggc
gtgccgcacgaattcagccagccggcgctcgacgaagccgccgcgctgccggacaaggta
cggccggccgatctgcgcttccgcgtcgatttgcgcgacgtgccgctcgtgacgatcgac
ggcgaggacgcgcgcgacttcgacgatgcggtctactgcgagcccaccaaggtcggccgc
ggcgacggcttccggctgatcgtcgcgattgccgacgtttcgcactacgtgcagcccggc
aacggcctcgacgccgacgcgctggagcgcagcacgtcggtgtacttcccgcgccgcgtg
attccgatgctgccggagaagctgtcgaacggcctgtgctcgctgaatccgcaggtcgac
cgctgcgtgctcgcgtgcgacatggtgatcaccgcgcgcggcgagatcaaggcgtaccag
ttctatccggccgtcatccactcggccgcgcggctcacgtacaccgaagtcgctgccgtg
ctgtcgaacacgaaggggccggaagccgcgcgccgcgcggatctcctgccgcacctgcag
gatctgtacggcgtgtacaaggcgctgttcgccgcgcgtcagaagcgcggcgcgatcgac
ttcgacacgaccgagacgtacatcgtctgcaattcgcagggcaagatcgagcagatcgtg
ccgcgccagcgcaacgacgcgcacaaactgatcgaggaatgcatgctggccgcgaacgtc
tgcgcggccgatttcctgaagcgcaacaagcatgcgggcctgtaccgcgtccatgcgggc
ccgacgcccgagaagctcgagaacctgcgcgcgttcctgcgcggcatgggcctgacgctc
ggcggcggcgagaagccgcacgcgagcgactatgcggcgctgatggcgcagatccgcgac
cggcccgacgcgcagatgctgcagccgatgctgctgcgctcgatgcagcaggccgtgtac
agcccggacaacatcggccacttcggtctcgcctacgaggcgtacgcgcacttcacgagc
ccgattcgccgctatcccgatctgctcacgcaccgcgcgatctacgcgatcctgtcgggc
aagaagtacacgccgaaggcgccggaaggcttcgagctgaacaccgctttgtcgccccgc
gcgcgcgcgatgcagcaggccgacgacgaaacgcgcggccgctcgcgtccgaacacggcg
atctgggaagagctcggtctgcactgctcggcgaacgagcggcgcgccgacgaagcgtcg
cgcgacgtcgaagcgtggctcaagtgctacttcatgcgcgacaagctcggcgaggagtac
ggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtgcagctcgacacgctgttc
atcgaagggctcgtgcacgtcacggagctcggctcggactatttccagtacgacgagatc
aagaacgaactgcgcggcgagcgcacgggcatccgctatcgcttgtcggatcgcgtgcgc
gtgcaggtgagccgcgtcgatctcgacgcgcgcaagatcgacttccgcctcgtgcgcgac
acgccggtgaaggcgccgcgtccggcgccgcaggcgcccgctgcgggcggcaatggcaac
gccaatgccaacggcagcgatcgcggcggcccgcgcttgcgcatgctgccggccgcggac
gaagccgcgccgcgccgcaagcaggcggcgagcgcgccgactgccgcggtgaaggaggca
cgtgccgcgcgcgccgcgaagaagaagggcggtgcggcggcgaagacgcccgccaagaag
gcgcacccgcgcaagaagtattga
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