Beta vulgaris (sugar beet): 104888733
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Entry
104888733 CDS
T03548
Name
(RefSeq) general negative regulator of transcription subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104888733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104888733
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104888733
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104888733
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
104888733
NCBI-ProteinID:
XP_010672075
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Position
3:complement(9826271..9845372)
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AA seq
864 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDNFEAEMEGLSVKKGKTRPPRLTHLETSIARHKA
HIMKLELILRLLDNDELSAEHVNDVKDFLEDYVERNQEDFDEFSDVDEFYSTLPLDKVEA
LEDLVTMGQPGLAKGMKSQAGGATSSVLSLKTSSSTSSSLASATVTSPQLSVPIQEQDET
NSQDSSSDTVPRTPPSKTSILSSSNPSSLPASQTALANPSTHLSSSPTASASVPGSGSMR
GVLEGAIPSSPLNLPNVAKEEDAVNFPVRRSSPALTDTAALTRGIGRGTIPSQPPVSVPL
SSVGTVPSSSMTLGAVPLASELAKRNILGSDERLANSVVAGRQFSSSVVPGMQWRPGSSF
QSQNEVFRGRTEIAPDQREKFLEKLHQVQQQGPSNILGMPSLAGGNSKPFSGQQQNPLMQ
QLSSQSLSISSQVGLGLGLQSPGLSTGSSTPMQQQSISIHQQAVQRGSSIVSPKDSDDGL
AVIEDQQQQNLSEDSAVEIAPGSGISKNLMNDDEFKASYVKDVSSGSASGPMAESAQLTR
DADFSPGQPLQSSQPPGSLGVIGRRSVSDLGAVGDSIGGAANSGGMHDHLYNLQMLEAAF
SKRPSSHDSERAKSYTPRHPTVTPSSYPQAQAPIVNNPAFWERLGLDTLGTDTLFFAFYH
QPNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKIATDEFEKGTYVYFDFHVSNEDPN
QGWCQRIKADFTFEYGFLEDELIV
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgggagctagtcgaaagttacaaggtgaaatcgatcgagttttgaagaaggttcaagaa
ggtgtcgacgttttcgacagtatatggaacaaggtttacgacactgataatgcgaatcag
aaagaaaagtttgaagctgatttgaagaaggaaattaagaaattgcagagatatagagat
caaatcaaaacatggatacaatctagtgaaattaaggataaaaaggttagtgcatcttat
gagcaggctttggtggatgctcggaagcttattgaacgtgaaatggaacggtttaaaata
tgtgagaaggagaccaagacgaaagcattttcaaaagaaggccttggccaacaacctaaa
actgaccctaaggagaaagcaaaatcagagacaagagattggttgaacaatgtggtagga
gagttagagtctcaaattgataattttgaggctgagatggagggcttatctgttaagaaa
ggaaagacaagaccccctagactgacacacttggagacttccatagctcgtcacaaggct
catataatgaaattagaattgatattgcgattgttagataatgatgaattgagtgctgaa
catgtaaatgatgtgaaggactttcttgaagattatgtggaacgtaatcaggaagatttt
gatgaatttagtgatgttgatgagttctacagcaccttaccattagacaaagtagaagct
cttgaagatcttgtgacaatgggccaacccggacttgctaagggcatgaagtcacaggct
ggtggtgctaccagttcagttctaagtttaaagacatcatcgagtacatcatcttctttg
gcgtcggcgacagttacatcccctcaactgagtgttcccatccaggagcaagatgaaaca
aattctcaggatagtagttctgataccgtcccaagaactccgccttctaagactagcata
ctcagttcttcaaatccatcaagtctacctgcaagtcagactgctttagcaaacccttct
actcatctttcttcgtcgccaactgcttcagcttctgttcctggctcaggctccatgcga
ggcgttctggaaggtgctattccttcttctcctctgaatcttccaaatgttgccaaagaa
gaggatgcagtgaacttccctgtacgaagatcatcacctgctctcacagatactgcagca
cttactcggggtataggtcggggtaccatacctagccaacctcctgttagcgtccctctt
agctctgttggtacagttcctagcagcagcatgacacttggtgcagttcctttggcatcg
gaattagcaaagagaaatattctaggatcagatgaaaggctagcaaatagtgttgttgct
ggtagacaattttcttcatcagtggtccctggtatgcagtggaggcctggaagttctttc
cagagtcagaatgaagtgttccgtggaagaactgaaattgctccggatcaaagggagaag
tttttggaaaagttgcaccaagtgcagcagcaaggtcccagcaatattcttggaatgcca
agtcttgcaggcggaaattctaaaccattctcggggcagcagcaaaatccactaatgcaa
cagttaagctctcaaagcttgtctatttcctctcaagtcgggcttgggctaggattgcaa
tctcctggcttaagcactggttcctctacgcctatgcaacaacaatcaatttctattcat
cagcaggctgtccagcgaggatcttctatagtttctccaaaagattcagatgatggcctt
gcagtgatcgaggatcagcaacaacagaacttatctgaggattcggctgttgagatagct
cctggttctgggatctccaaaaatctgatgaatgatgatgagtttaaagcttcttatgtg
aaggatgtctcaagtggaagtgcatctggtccaatggcagagtcagcccaactgacaaga
gatgcagatttttctcctggccaacctttgcaatcaagtcaaccacctggtagccttgga
gttataggtcggagaagtgtctcagacctcggggccgttggtgatagcattggcggagca
gctaactctgggggaatgcatgatcatttgtacaatctgcagatgcttgaagctgcattc
tccaaacgtccttcttcccatgactcagaacgtgcaaagagctatacacctagacaccct
acagtaactccttcaagctacccacaagcgcaggcaccaattgtcaataatcctgctttc
tgggaacgactgggtcttgataccttggggaccgataccttattttttgcattctatcat
caaccgaatacatatcaacaatatttggctgcaaaagagttaaaaaaacaatcatggaga
taccataggaaatacaacacttggtttcagaggcatgaagaaccaaagattgccactgat
gaatttgaaaaggggacttatgtctactttgattttcatgtttccaatgaagacccaaat
caaggatggtgccaaagaatcaaggcggactttacttttgagtatggcttcttagaggat
gaactaattgtatag
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