Burkholderia vietnamiensis G4: Bcep1808_6891
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Entry
Bcep1808_6891 CDS
T00493
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bvi
Burkholderia vietnamiensis G4
Pathway
bvi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bcep1808_6891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvi03400
]
Bcep1808_6891
Enzymes [BR:
bvi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bcep1808_6891
DNA repair and recombination proteins [BR:
bvi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bcep1808_6891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABO59778
UniProt:
A4JU25
LinkDB
All DBs
Position
pBVIE01:280456..282351
Genome browser
AA seq
631 aa
AA seq
DB search
MPAVVAPQLAVLARRPPSTGDWCWEIKFDGFRLMCRLEDGRARLFTRGGHDWASKMPVLA
RAIETLPVETVWLDGEVVVLNDSGLPDFNALQNAFDRRSTSELTYFAFDILFLNGRDLRA
LSLRERREALVPLIEDVQSDRIRISDSFTDDPNSLLASACRMRLEGIMGKRLDSPYRSGR
STDWIKLKCFQKQEFVVGGVTRNAGARSGIRSLMIGVHEPDGSLRYAGTVKAELRPTQRA
ELEQRAAALTTMSPPFYNPPARERGRDFVWLTPEIVVEVSFLEWTPRGATRQPTLKGLRY
DKAASSVTEETVVDVDEPGDRAREGLSEHGRNARAPVVAGVKISNPNRVIDKQSGIRKIE
LVRYYDEISEFAIPYLTARPVSLVRAPDGVQGELFFQKHEERSVIPGITRLPSDFFPGHQ
PLLVIDTREALVGVAQMNAVEMHTWNASQPDLDYPDRFVLDLDPDPTLPWQMMTDAATLA
KVLLDEIGLKSFIKTSGGKGYHIVVPVTRRQGWEEIKTFSQAIARYMARLMPERFSAVLG
PKNRVGKIFIDYLRNSKGASTAAIFSARARPGMGVSMPIAWEELNEVASADQWNITNAAQ
RMHSLRVDPWAGYHRTRQGVTTSMSRAVGLK
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcggtcgtcgcgccgcaacttgcggtccttgccagacggccgccaagcactgga
gattggtgctgggagataaaattcgacggctttcggctgatgtgcaggcttgaagacggc
cgtgcccgactcttcacgcgcggtggtcacgactgggctagcaagatgcctgtattggcc
cgcgcgattgagacgttacccgttgagacggtttggctcgatggcgaggtcgtggtgcta
aacgatagcggattgcctgacttcaatgcgctgcaaaacgcttttgatcggcggagcaca
tcggaactgacctacttcgcgttcgacattctctttctgaacggacgcgatctgcgcgcg
ttgtctcttcgtgagcggcgagaagcgcttgtcccgctgatagaagatgttcaaagcgac
cggattcgtatcagcgactcattcacggatgacccaaattcgttgctggcgtccgcctgc
cggatgcggttggaaggcatcatgggtaagcgcctcgattctccctatcgttccggccgc
tccactgactggatcaagctaaagtgcttccagaagcaagagtttgtcgttggcggtgtc
accagaaatgctggcgcgcgttcaggaatccgctccctcatgatcggcgttcacgagcct
gatggatcgctgagatacgccggcacggtgaaggctgaattgcggcccacacaacgcgca
gaacttgagcagagggccgcagcgttgactaccatgtcgccgcctttctacaaccccccg
gcgcgagagcgaggcagagacttcgtgtggctgactcccgagattgtcgtcgaggtgtcg
tttctcgaatggactcctcgtggggcaaccaggcagcctacactcaaaggccttcgatac
gacaaggccgcatcgtcagtcacagaagagaccgtggttgacgttgacgagccgggcgac
cgggcaagagaggggttgtcggagcatggccggaatgcccgcgctccggttgtcgcaggc
gtgaagatttccaatccaaaccgggtgatagacaaacaatctggaatccgaaagatagaa
ctcgtgcgctactacgatgagatttcggagtttgcgattccgtacctcacggctcggcct
gtgtctctggtacgcgcaccggatggagtgcagggtgagttgtttttccaaaagcacgag
gagcgctccgtgatacctggcataacgcggttgccttcagatttctttcccggacatcaa
cccttgttagtgattgatactcgggaggcgctcgtcggcgtcgcgcagatgaacgcggtg
gagatgcatacttggaacgcttctcagccggaccttgactacccagaccgattcgttctg
gacttagacccagatccaacattgccatggcagatgatgaccgatgcggcgacgttagca
aaagtgttgttggatgagatcggattgaaaagtttcatcaagacaagcgggggcaagggc
tatcacatcgtcgtgcccgtcacccgcaggcaaggttgggaggaaatcaagacgttctcg
caggcgattgcgcgatacatggcgcgactcatgccggagcgattttcggcagtgctcgga
ccgaagaatcgcgtggggaagatctttatcgactaccttcgaaacagcaagggcgcgagc
acagcagcgatcttctccgcacgcgcacgacccggcatgggtgtctcgatgccgatcgcc
tgggaggagttgaacgaggtggcgtcagccgatcagtggaatatcacgaacgccgcgcag
aggatgcattcgctgcgcgttgatccttgggccggttaccatcgaacgcggcaaggcgtg
actacatcgatgagccgggccgtcggattgaaatga
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