Blastochloris viridis: BVIR_1511
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Entry
BVIR_1511 CDS
T04109
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bvr
Blastochloris viridis
Pathway
bvr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BVIR_1511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvr03400
]
BVIR_1511
Enzymes [BR:
bvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BVIR_1511
DNA repair and recombination proteins [BR:
bvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BVIR_1511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
RecG_dom3_C
ERCC3_RAD25_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ALK09293
UniProt:
A0A0H5BJX7
LinkDB
All DBs
Position
1650340..1653858
Genome browser
AA seq
1172 aa
AA seq
DB search
MNKPLRAPQSLTPGKPVTFASVADGIEPLVAGDLARAAAARPDAPAVSLLMVCRDGPRMQ
AIESALGFFAPDVEVLSLPAWDCQPYDRASPNAAIVARRMSVLARLARVTGRDKPAILLT
TVNAVLQRLPARETVAVQSLAVAPGNMVAMAGIVEWLEINGFLRSATVRDTGEYAVRGGI
VDMFPPGLDLPVRLDFFGDTLESIRTFDPETQRSVAQMRQLEFVPVSELQLTTDSIRRFR
LGYVAAFGAATKGDTLYETISEGRRSPGHEHWLPLFHEKLDTLFDYLPGTPVVLEPLAED
AVKERFAQIADYYQARREALDMPASGTMQAVYKPLPPDKLYLTAGEWQGRLGERGLARFS
PFAVPDTVNVVDVGAKRGHSFAAERASDANVFDAVVAHIRTLQEGGKAVVVAAWTEGSRE
RLGHVLRDHGLERIETVGSWAKALALDARTTGLAILGLETGFETDAVAVLAEQDILGERL
VRPRRAAKRAQNFIAEVTSLNAGDLVVHVDHGIGRFVGLKTVEAAGAPHDCLELHYAGGD
RLFLPVENIELLTRYGSEDAGAVLDKLGGHGWQTRKARMKSRIREMASALIKVAAERTLK
EAPRLTVAPGLADEFAARFPFDETDDQLAAIEAVTDDLAAGHPMDRLVCGDVGFGKTEVA
LRAAFACVMNGKQVAVVVPTTLLARQHARTFTERFKGLPINVAEASRMVGSSDLAKVKTG
IVTGGIDIVVGTHALLSKGINFKDLGLLIVDEEQHFGVSHKERLKQLRAEVHVLTLTATP
IPRTLQLAMSGVREMSIIATPPVDRLAVRTFIAPFDGLVVREALLRERYRGGQAFYVCPR
IEDIAACKDFLDKNVPEVKVVVGHGQMSAKELESVMTAFYEGKADVLLSTTIVESGLDIP
TANTLIVHRADMFGLAQLYQLRGRVGRAKTRAYALFTVSADKPLTAQAERRLKVLQSLDT
LGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGFELYQQMLEEAVEMMKAGITEPVSDQW
SPQITLGVPVTIPEDYVADLNVRLTLYRRLADLEDDTQIEGVAAEMVDRFGPMPPEVDQL
LKIVAIKALCRRANVEKVDAGPKGVVIAFRDNTFKNTRGLMSFILDQGPTAKVRPDQRIL
FLRDFDKVSERLKGTMMILRSLAKIATRAEAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagccgcttcgcgccccccaatccctcactcccggcaagccggtgaccttcgcc
agcgtggcggacggcatcgagcctctggtcgcaggcgaccttgcccgcgccgccgccgcc
cggcccgacgccccggcggtcagcctcttgatggtgtgccgcgacggcccgcggatgcag
gcgatcgagagcgcgctcggcttcttcgcgcccgatgtcgaggtgttgtcgctgccggca
tgggactgccagccctacgaccgggcttcgcccaacgccgccatcgtcgcccgccgcatg
tcggtgctggcgcggctcgcccgcgtcaccggccgcgacaagccggcgatcctgctgacc
accgtcaatgccgtgctgcagcgcctgccggcgcgcgagacggtggcggtgcagtcgctg
gcggtggcgcccggcaacatggtggcgatggcgggcatcgtcgagtggctggagatcaac
ggcttcttgcgcagcgccacggtgcgcgacaccggcgaatacgcggtgcgcggcggcatc
gtcgacatgttcccgccggggctcgacctgccggtgcggctcgatttcttcggcgatacg
ctggagtcgatccgcaccttcgacccggagacccagcgctcggtggcgcagatgcgccag
ctcgaattcgtgccggtcagcgaactgcaactcaccaccgacagcatccgccgcttccgc
ctcggctatgtcgcggcgttcggtgctgccaccaagggcgatacgctctacgagacgatt
tccgaaggtcgccgctcgcccggccacgagcattggctgccgctgttccacgaaaagctc
gataccctgttcgactatctgcccggcacgcctgtggtgctggagccgttggccgaggac
gcggtgaaggagcgtttcgcccagatcgccgactattatcaggcgcggcgcgaggcgctc
gacatgccggcgagcggtaccatgcaggcggtctataagccactgccgccggacaagctc
tatctcaccgcgggcgaatggcaggggcggctcggcgagcggggcctggcgcgattttcg
ccgttcgcagtgcccgacaccgtcaacgtcgtcgacgtcggtgccaagcgcggccatagc
ttcgccgccgagcgcgccagcgacgccaacgtgttcgacgcggtggtggcgcacatccgc
accctgcaggagggcggcaaggccgtggtggtggcggcctggaccgagggctcgcgcgag
cgcctcggccacgtgctgcgcgaccatggcctggagcggatcgagacggtgggaagctgg
gccaaggcgttggcgctcgacgcccgcaccaccggtcttgccatccttggcctcgaaacc
gggttcgagaccgacgcggttgcggtgctggccgagcaggacattctcggtgagcggctg
gttcggccgcggcgcgccgccaagcgcgcccagaacttcatcgccgaggtgacgagcctc
aatgccggcgatctggtggttcacgtcgaccacggcatcggccgcttcgtcggcctgaaa
acggtcgaggccgcgggcgcaccgcacgattgcctggagctgcattacgccggcggcgac
cggctgttcctgccggtcgagaacatcgagcttctgacccgctacggctccgaggacgcc
ggggcggtgctcgacaagctcggcggccacggctggcagacccgcaaggcgcggatgaag
agccgcatccgcgagatggcgtcggcgctgatcaaggtcgcggccgaacgcacgctcaag
gaggcgccgcgcctcaccgtggcgccgggtctggccgatgagtttgcggcgcggttcccg
ttcgatgagaccgacgatcagcttgccgctatcgaggcggtgaccgacgatctggccgcc
ggccacccgatggaccgcctggtgtgcggcgacgtcggattcggcaagaccgaagtcgcg
ctgcgcgccgccttcgcctgcgtgatgaacggcaagcaggtcgcggtggtggtgccgaca
acgctgctcgcccgccagcacgcccgcacgttcaccgagcgtttcaagggcttgccgatc
aacgtcgccgaggcctcgcgcatggtcggctcatccgatctggcgaaggtgaagaccggc
attgtcacgggcggcatcgacatcgtggtcggcacccacgcgctgctcagcaagggcatc
aacttcaaggaccttggcctgctcatcgtcgacgaggaacagcatttcggcgtcagccac
aaggagcgcttaaagcagctccgcgccgaggtccacgtcctgacgctgacggcgacgccg
atcccgcgcacgctgcagctcgccatgtcgggcgtgcgcgaaatgtcgatcatcgcgacg
ccgccggtggaccgcctcgcggtgcgcaccttcatagcgccgttcgacggcctggtggtg
cgcgaggcgctcctgcgcgagcgctatcgcggcggccaggcattctacgtctgcccgcgg
atcgaggacatcgccgcgtgcaaggacttcctcgacaagaacgtcccggaggtgaaggtg
gtggtcggccacggccagatgtcggcgaaggagctcgagagcgtgatgaccgcgttctac
gagggcaaggccgacgtgctgctctccaccaccatcgtcgaatccggtctcgacattccg
accgcgaacacgctgatcgttcaccgcgccgatatgttcggcctcgcccagctttatcag
ctgcgcggccgcgtcggtcgcgcgaaaacccgcgcctacgcgctgttcacggtttcagcc
gacaagccgctcaccgcgcaggccgagcgtcggctgaaagttctgcagtcgctcgatacg
ctgggcgccggcttccaacttgcctcgcacgacctcgacatccgcggcgccggcaatctg
cttggcgacgagcagtccggccatatcaaggaagtcggttttgagctctaccagcagatg
ctggaggaggcggtcgagatgatgaaggccggcatcaccgaaccggtgtccgaccagtgg
tcgccgcagatcacgctgggcgtgccggtgacgatcccggaggactacgtcgccgacctc
aacgtgcgcctcacgctctatcgccgcttggcggatctggaggacgacacccagatcgaa
ggggtggcggcggaaatggtcgaccgcttcgggccgatgccgccggaggtcgaccagttg
ctcaagatcgtcgccatcaaggcgctatgccggcgcgccaatgtcgagaaggtcgacgcc
ggaccgaagggcgtggtgatcgcgttccgcgacaacaccttcaagaacacccgtggcctg
atgagctttatcctcgaccagggaccgacggcgaaggtgcggccggaccagcgcattctg
ttcctgcgcgatttcgacaaggtgtccgaacgcctcaagggcaccatgatgattctgcgc
agcctcgccaagatcgcgacgcgggccgaggcagcgtga
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