Paraburkholderia xenovorans LB400: DR64_32
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Entry
DR64_32 CDS
T03290
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bxb
Paraburkholderia xenovorans LB400
Pathway
bxb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bxb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DR64_32 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bxb03400
]
DR64_32 (ligD)
Enzymes [BR:
bxb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DR64_32 (ligD)
DNA repair and recombination proteins [BR:
bxb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DR64_32 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AIP31370
UniProt:
Q13Z47
LinkDB
All DBs
Position
1:complement(34178..37183)
Genome browser
AA seq
1001 aa
AA seq
DB search
MNDRLDTYNRKRRFDDTPEPAGTRTSRKQGGRKTAGQASPEALSYVIQEHDARRLHYDFR
LELNGTLLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGSFEGEIPLGNYGAGSVIVWDRGT
WEPLGGAAEAARAYAAGKLKFQLHGEKLHGGWTLVRSHMRGSGDKEQWLLIKERDDEARD
ESKYDILKKRPGSVLADSAAAVKGAKTAKTAAAKSTAKTASKAAVATATKATADPDSASL
AKRTGRNGAQKASSSRADPKRPDIVATRSAQSLRDLAASPSIEGAVPARLPATFKPQLAT
LVDGAPPGNEWSYEIKFDGYRVLVRIDRATKGSAVKVLTRAGNDWTAKFSKQVKAFEQLD
IESAWLDGEAVVLNQNGVPNFQALQNAFDSNRPQDIVIYLFDIPFLNGYDLRGVPLEQRR
AILRALLEDADDSVLRFSNNFEFSADDLLRSACDMALEGIIGKRRDSGYMSGRSSAWIKL
KCRRRQEFVIGGYSEPSGSRAAFGALLLGVYDGNGKLQYAGRVGTGFDAALLRSVKKELD
AHETRHMPFAAAPRERSRTPVHWVEPVLVAECNFAEWTSDGIVRQASFVSLRSDKPARQI
VKETPRQGADVQQQTDSVSNDAPTKRAARKTSASAATTSGEGKTRVAKSKTADAKDASTK
SRGVEASGAKGSAAKAAATKPTAATAKAAKATKTSAAKANTTSAPGEVAGVRVSHPDRVI
DRSTGTRKIDLVRYYESVADWMLPHLRDRPVSLVRAPEDIDGELFFQKHSQKLSIPNVTQ
HPGLDPGHPPLITVDTLKALVGAAQMGTVEFHTWNAVVSNIEKPDRMVFDLDPDASLGWE
RMIEAAQLTRSLLEELGLASFCKTSGGKGFHVVVPLAKQAGWDEVKDFSQAVAQHMAATL
PRYFSAKMGAQNRKQKIFVDYLRNNRGSSTVAAFSARARPGLGVSVPLAWDEVATTTGGA
QWTIENLHERLADLKSDPWADYAKTRQRITAAMKKRLDDAQ
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacagactcgacacctacaaccgcaaacgccgcttcgacgacacgccggaacct
gcgggcacgcgcacgagtcgcaagcagggcggccggaagacggccgggcaggcgtccccg
gaggcgctgtcgtacgtgattcaggagcacgacgcgcgtcgtttgcactacgacttccgg
ctcgaactgaacggcacgctcctgtcctgggcggtgccgaaagggccgagcctcgacccg
tcagtaaagcggctggcggtgcatgtcgaagaccatccggtcgaatacggttcgttcgaa
ggcgaaattccgctgggcaattacggcgcgggcagtgtgatcgtgtgggatcgcggcaca
tgggagccgctcggcggcgcggccgaggcggcgcgcgcttacgcggccggcaagctcaag
ttccagttgcacggcgagaagctgcacggcggctggacgctggtgcgcagccatatgcgc
ggcagcggcgacaaggaacagtggctgctcatcaaggaacgcgacgacgaagcgcgcgac
gaaagcaagtacgacattctgaagaagcgtccgggcagcgtgctcgccgatagcgctgcg
gcagtcaaaggcgcaaaaactgcaaagacggcggccgcgaagagcacagcaaaaactgca
agcaaagcggccgtggccacggccacgaaagccactgcggatcctgactcggcgtcgctc
gcaaaacgaaccggcaggaacggcgcgcagaaagcttcatccagccgcgcggacccgaag
cgacccgacatcgtcgccacgcgcagcgcgcaatcgctgcgcgacctcgccgcttcgccg
tcgatcgagggcgcggtgccggcacgcttgcccgcgaccttcaagccgcaactggcgacg
ctcgtcgacggcgcgcctcccggcaatgaatggtcgtacgaaatcaagttcgacggctat
cgtgtgctggtccgaatcgatagggcgaccaagggaagcgcggtcaaggtgctcacccgc
gccggcaacgactggaccgcgaagttcagcaaacaggtcaaggcgttcgaacaactcgac
atcgaaagtgcatggctcgacggcgaggccgtcgtgctgaaccagaacggcgtgccgaat
tttcaggcgctgcaaaacgcgttcgattcgaaccgcccgcaagacattgtgatttacctg
ttcgacataccgtttctgaacggctacgacttgcgcggcgtgccgctcgaacaacgccgc
gcgattctgcgcgcgttgctcgaagacgccgacgacagcgtgctgcgcttctcgaacaat
ttcgagttcagcgcggatgacctcctcaggagcgcgtgcgacatggcgctggaaggcatc
atcggcaagcggcgcgacagcggctatatgtcgggacgttcgtcggcgtggatcaaactg
aagtgccgccgacgccaggagttcgtgataggcggctactcggaaccgtccggcagccgc
gcggcgttcggtgcgctgctgctcggcgtctatgacggcaacggcaagttgcagtatgca
gggcgcgtgggcaccggtttcgacgcggcgctgctgcgctcggtgaagaaagaactcgat
gcgcacgagacccggcacatgccgttcgccgccgcgccgcgcgaacgcagccgcacgccg
gtgcattgggtcgaaccggtgctggtcgccgaatgcaatttcgcggaatggacgagcgac
ggcatcgtgcggcaggcgtcgttcgtgagtctgcgcagcgacaagccggcgcgccagatc
gtcaaggaaacacctcgacagggagccgacgtgcaacagcaaaccgattctgtgtctaac
gacgcgccgaccaaacgtgccgcgcgcaagacttccgccagtgcggcgacaacgtccggc
gaggggaaaactcgcgtggcgaaatcgaagactgcggatgcgaaagacgccagtacaaag
agccgtggagtagaggcaagcggtgcgaaaggcagcgctgcgaaagccgctgcaaccaaa
ccaacggcagcgacagccaaagcagcgaaagcgacgaaaacctcagccgcaaaagcaaac
accacctcagcccccggcgaagtcgccggcgtccgcgtctcccatcccgaccgcgtcatc
gacaggagcacgggcacgcgcaagatcgatctcgtgcggtactacgaatcggtggccgac
tggatgctgccgcatctgcgggaccgcccggtttcgctggtgcgcgcccccgaggacatc
gacggcgagctgtttttccagaagcacagccagaagctgtcgattccgaatgtcacccag
catccggggctcgatccggggcatccgccgctgattaccgtcgatacgctcaaggcgctg
gtcggcgccgcgcaaatgggcaccgtcgaatttcacacgtggaatgccgttgtgtcgaac
atcgaaaagccggaccgcatggtgttcgacctcgacccggatgcctcgctgggttgggag
cgcatgatcgaagccgcgcaattgacgcgttcgctgctcgaagaactcggtctcgcgtcg
ttctgcaagacgagcggcggcaagggatttcacgtggtcgtgccgctcgcgaagcaggcc
ggctgggacgaagtgaaggacttttctcaagccgtcgcgcagcacatggcggcgacgctg
cccaggtacttcagcgcgaagatgggcgcgcagaatcgcaagcagaaaattttcgtcgac
tacctgcgcaacaaccgcggatcgagcacggtcgccgcattttccgcgcgcgcgcggccg
ggcctgggcgtatcggtgccgctggcctgggacgaagtcgccaccacgacgggcggcgct
cagtggaccatcgagaatctgcacgaacgcctcgccgacctgaaaagcgacccgtgggcg
gactatgcgaaaacgcgccagcgcattaccgctgccatgaaaaaacgcctggacgacgcg
cagtaa
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