KEGG   Paraburkholderia xenovorans LB400: DR64_32Help
Entry
DR64_32           CDS       T03290                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bxb  Paraburkholderia xenovorans LB400
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bxb00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    DR64_32 (ligD)
Enzymes [BR:bxb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DR64_32 (ligD)
DNA repair and recombination proteins [BR:bxb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DR64_32 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
1:complement(34178..37183)
Genome map
AA seq 1001 aa AA seqDB search
MNDRLDTYNRKRRFDDTPEPAGTRTSRKQGGRKTAGQASPEALSYVIQEHDARRLHYDFR
LELNGTLLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGSFEGEIPLGNYGAGSVIVWDRGT
WEPLGGAAEAARAYAAGKLKFQLHGEKLHGGWTLVRSHMRGSGDKEQWLLIKERDDEARD
ESKYDILKKRPGSVLADSAAAVKGAKTAKTAAAKSTAKTASKAAVATATKATADPDSASL
AKRTGRNGAQKASSSRADPKRPDIVATRSAQSLRDLAASPSIEGAVPARLPATFKPQLAT
LVDGAPPGNEWSYEIKFDGYRVLVRIDRATKGSAVKVLTRAGNDWTAKFSKQVKAFEQLD
IESAWLDGEAVVLNQNGVPNFQALQNAFDSNRPQDIVIYLFDIPFLNGYDLRGVPLEQRR
AILRALLEDADDSVLRFSNNFEFSADDLLRSACDMALEGIIGKRRDSGYMSGRSSAWIKL
KCRRRQEFVIGGYSEPSGSRAAFGALLLGVYDGNGKLQYAGRVGTGFDAALLRSVKKELD
AHETRHMPFAAAPRERSRTPVHWVEPVLVAECNFAEWTSDGIVRQASFVSLRSDKPARQI
VKETPRQGADVQQQTDSVSNDAPTKRAARKTSASAATTSGEGKTRVAKSKTADAKDASTK
SRGVEASGAKGSAAKAAATKPTAATAKAAKATKTSAAKANTTSAPGEVAGVRVSHPDRVI
DRSTGTRKIDLVRYYESVADWMLPHLRDRPVSLVRAPEDIDGELFFQKHSQKLSIPNVTQ
HPGLDPGHPPLITVDTLKALVGAAQMGTVEFHTWNAVVSNIEKPDRMVFDLDPDASLGWE
RMIEAAQLTRSLLEELGLASFCKTSGGKGFHVVVPLAKQAGWDEVKDFSQAVAQHMAATL
PRYFSAKMGAQNRKQKIFVDYLRNNRGSSTVAAFSARARPGLGVSVPLAWDEVATTTGGA
QWTIENLHERLADLKSDPWADYAKTRQRITAAMKKRLDDAQ
NT seq 3006 nt NT seq  +upstreamnt  +downstreamnt
atgaacgacagactcgacacctacaaccgcaaacgccgcttcgacgacacgccggaacct
gcgggcacgcgcacgagtcgcaagcagggcggccggaagacggccgggcaggcgtccccg
gaggcgctgtcgtacgtgattcaggagcacgacgcgcgtcgtttgcactacgacttccgg
ctcgaactgaacggcacgctcctgtcctgggcggtgccgaaagggccgagcctcgacccg
tcagtaaagcggctggcggtgcatgtcgaagaccatccggtcgaatacggttcgttcgaa
ggcgaaattccgctgggcaattacggcgcgggcagtgtgatcgtgtgggatcgcggcaca
tgggagccgctcggcggcgcggccgaggcggcgcgcgcttacgcggccggcaagctcaag
ttccagttgcacggcgagaagctgcacggcggctggacgctggtgcgcagccatatgcgc
ggcagcggcgacaaggaacagtggctgctcatcaaggaacgcgacgacgaagcgcgcgac
gaaagcaagtacgacattctgaagaagcgtccgggcagcgtgctcgccgatagcgctgcg
gcagtcaaaggcgcaaaaactgcaaagacggcggccgcgaagagcacagcaaaaactgca
agcaaagcggccgtggccacggccacgaaagccactgcggatcctgactcggcgtcgctc
gcaaaacgaaccggcaggaacggcgcgcagaaagcttcatccagccgcgcggacccgaag
cgacccgacatcgtcgccacgcgcagcgcgcaatcgctgcgcgacctcgccgcttcgccg
tcgatcgagggcgcggtgccggcacgcttgcccgcgaccttcaagccgcaactggcgacg
ctcgtcgacggcgcgcctcccggcaatgaatggtcgtacgaaatcaagttcgacggctat
cgtgtgctggtccgaatcgatagggcgaccaagggaagcgcggtcaaggtgctcacccgc
gccggcaacgactggaccgcgaagttcagcaaacaggtcaaggcgttcgaacaactcgac
atcgaaagtgcatggctcgacggcgaggccgtcgtgctgaaccagaacggcgtgccgaat
tttcaggcgctgcaaaacgcgttcgattcgaaccgcccgcaagacattgtgatttacctg
ttcgacataccgtttctgaacggctacgacttgcgcggcgtgccgctcgaacaacgccgc
gcgattctgcgcgcgttgctcgaagacgccgacgacagcgtgctgcgcttctcgaacaat
ttcgagttcagcgcggatgacctcctcaggagcgcgtgcgacatggcgctggaaggcatc
atcggcaagcggcgcgacagcggctatatgtcgggacgttcgtcggcgtggatcaaactg
aagtgccgccgacgccaggagttcgtgataggcggctactcggaaccgtccggcagccgc
gcggcgttcggtgcgctgctgctcggcgtctatgacggcaacggcaagttgcagtatgca
gggcgcgtgggcaccggtttcgacgcggcgctgctgcgctcggtgaagaaagaactcgat
gcgcacgagacccggcacatgccgttcgccgccgcgccgcgcgaacgcagccgcacgccg
gtgcattgggtcgaaccggtgctggtcgccgaatgcaatttcgcggaatggacgagcgac
ggcatcgtgcggcaggcgtcgttcgtgagtctgcgcagcgacaagccggcgcgccagatc
gtcaaggaaacacctcgacagggagccgacgtgcaacagcaaaccgattctgtgtctaac
gacgcgccgaccaaacgtgccgcgcgcaagacttccgccagtgcggcgacaacgtccggc
gaggggaaaactcgcgtggcgaaatcgaagactgcggatgcgaaagacgccagtacaaag
agccgtggagtagaggcaagcggtgcgaaaggcagcgctgcgaaagccgctgcaaccaaa
ccaacggcagcgacagccaaagcagcgaaagcgacgaaaacctcagccgcaaaagcaaac
accacctcagcccccggcgaagtcgccggcgtccgcgtctcccatcccgaccgcgtcatc
gacaggagcacgggcacgcgcaagatcgatctcgtgcggtactacgaatcggtggccgac
tggatgctgccgcatctgcgggaccgcccggtttcgctggtgcgcgcccccgaggacatc
gacggcgagctgtttttccagaagcacagccagaagctgtcgattccgaatgtcacccag
catccggggctcgatccggggcatccgccgctgattaccgtcgatacgctcaaggcgctg
gtcggcgccgcgcaaatgggcaccgtcgaatttcacacgtggaatgccgttgtgtcgaac
atcgaaaagccggaccgcatggtgttcgacctcgacccggatgcctcgctgggttgggag
cgcatgatcgaagccgcgcaattgacgcgttcgctgctcgaagaactcggtctcgcgtcg
ttctgcaagacgagcggcggcaagggatttcacgtggtcgtgccgctcgcgaagcaggcc
ggctgggacgaagtgaaggacttttctcaagccgtcgcgcagcacatggcggcgacgctg
cccaggtacttcagcgcgaagatgggcgcgcagaatcgcaagcagaaaattttcgtcgac
tacctgcgcaacaaccgcggatcgagcacggtcgccgcattttccgcgcgcgcgcggccg
ggcctgggcgtatcggtgccgctggcctgggacgaagtcgccaccacgacgggcggcgct
cagtggaccatcgagaatctgcacgaacgcctcgccgacctgaaaagcgacccgtgggcg
gactatgcgaaaacgcgccagcgcattaccgctgccatgaaaaaacgcctggacgacgcg
cagtaa

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