Bacillus amyloliquefaciens XH7: BAXH7_02135
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Entry
BAXH7_02135 CDS
T01836
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bxh
Bacillus amyloliquefaciens XH7
Pathway
bxh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bxh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BAXH7_02135 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bxh03400
]
BAXH7_02135 (ligD)
Enzymes [BR:
bxh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BAXH7_02135 (ligD)
DNA repair and recombination proteins [BR:
bxh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BAXH7_02135 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEK89267
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Position
2060994..2062829
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AA seq
611 aa
AA seq
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MVLTMQPILTSAPPTGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTNQFPEITAFA
VLCFQHMKDRFPITLDGELVYLVNPYRADFEHIQIRGRLKRAEAIENIANKRPCRFLAFD
LLVLKGAATVSLPYVKRKHALFKLFEEANLPLSPRHLAEEAIQYIPEHTDFEALWDKVVR
YDGEGIVAKRVSSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGTAVPV
ASVSHGMQAEEKNAVRTIMETHGKKLKNGEYSLEPSICMTVQYLTILQDTLREVSFVSFQ
FGMDWTECTYQQLILRSKTLPPELQFTSLDKVVFKKREKTKEDFLCYMVKMSDVLLPFLK
DRAVTVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHEHIVCNSIPSLLWLANQLALE
FHVPFQTVHSKRPAEIVIDLDPPSRNDFPMAVEAAHVLKELFDSFSITSFPKLSGNKGIQ
LYIPLSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTI
IAPYSTRGNELGTVAAPLYWNEVNSSLTPDDYTIDTVVNRVRTEGDPFYEFYRNPQDGPL
SIVLEQIKRKS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgacgatgcagccgattctgacctctgcaccgcccacaggcagtgagtggcgc
tatgaggtaaagtatgacggattccgctgtcttctccgcatagacgaaagcggtgtcaca
ttaaccagcagaaacggccagacgctgacgaatcaatttccggaaatcacagcctttgcc
gtcctgtgttttcagcacatgaaagacaggttccccattacgcttgacggtgagcttgtt
tatttagtgaatccgtacagagcggactttgagcacattcaaatccgcggacgtttaaaa
cgggcggaagccattgaaaatatcgccaataaacggccgtgccgctttctggcatttgat
ctcttggttctgaaaggcgccgcgacagtctcattgccctatgtgaaacggaagcacgcc
cttttcaaactgtttgaagaagcaaatcttcctttaagcccccgtcacttagcggaagaa
gcgattcaatacattccggagcacactgactttgaagcgctctgggacaaggtcgtccgg
tatgacggagaaggcatagtagcaaaaagggtatcgagcggctgggcggaaaataaacgg
tctcccgactggcagaagtacaaacatatgaaaacggcacatgtgctgttaaccggattc
aatccgaaaaacgggtatgtgacggcctcggttttaaaagacggcaccgccgttcctgtc
gcatccgtttcccacggcatgcaggctgaggaaaaaaacgccgtcagaaccattatggag
acccacggaaaaaaactgaaaaacggcgagtattcactagagccctccatctgcatgacc
gtgcaatatttaaccatattgcaggacaccctgcgcgaagtatcttttgtttcctttcag
tttgggatggattggactgaatgcacttatcagcagctaatcctccgatctaaaacgctg
ccaccagagctgcagttcacaagcctggataaggtcgtttttaagaagcgtgaaaaaacg
aaagaagatttcctttgttatatggtgaagatgagcgatgttcttttgccctttcttaaa
gaccgggctgtcacagtaatccgatatccacacggggcgccgggcgagtctttttttcaa
aaaaacaagccggactacacgccggactttgtctcaagcgtgtttgacggaagccatgag
cacatcgtgtgcaacagcataccgtctcttttatggctggccaatcagctggcgctggaa
tttcacgttccttttcagacagtccattctaaaaggcccgcagaaatcgtcattgacctt
gatccgccgtcaaggaatgatttccctatggctgtggaggcggcgcatgtgctgaaagag
ctgtttgactcattcagcattacatcatttccgaagctttccggaaataaaggcattcag
ctctacatcccgctttcaccggaagcattcacctacgaagagacccgcgcgttcacaatg
ctcattgctgattattgcgtccggacgcgcccggatctatttacgacagagcggtttatc
aaaaaccgaaacggcaggctctaccttgattatttgcagcatgctgaaggaaaaacgatt
atcgccccctattcgacccggggcaacgaattgggaacggttgccgcccccctttattgg
aacgaagtcaattcctctttaacacctgatgattatacgattgatacagtcgtgaatcgc
gtcagaacagagggagatccgttttatgagttttaccgcaatccgcaggacggcccgctt
tcaatcgtgcttgagcaaatcaagagaaagagctga
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