Bacillus velezensis YAU B9601-Y2: BANAU_3277
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Entry
BANAU_3277 CDS
T02050
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bya
Bacillus velezensis YAU B9601-Y2
Pathway
bya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BANAU_3277 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bya03019
]
BANAU_3277 (rnr)
03016 Transfer RNA biogenesis [BR:
bya03016
]
BANAU_3277 (rnr)
Enzymes [BR:
bya01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BANAU_3277 (rnr)
Messenger RNA biogenesis [BR:
bya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BANAU_3277 (rnr)
Transfer RNA biogenesis [BR:
bya03016
]
Prokaryotic type
tRNA degradation factors
BANAU_3277 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
TFIIE_beta
CSN8_PSD8_EIF3K
Motif
Other DBs
NCBI-ProteinID:
CCG51298
UniProt:
I2CA81
LinkDB
All DBs
Position
complement(3486518..3488851)
Genome browser
AA seq
777 aa
AA seq
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MEKEAFMDRLLAFMKEEAYKPLTVQELEEMLNITEADEFKELVKALVALEETGQIVRTRS
NRYGLPEKMNLVKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQS
SGSRQEGTVIRILERSIDRVVGTYTETKSFGFVIPDDKKITSDIFIPKHANNGAAEGHKV
VVKLTSYPEGRMNAEGEIVEILGHKNDPGIDILSIIHKHGLPGDFPAEVMEQATSTPDSI
DEKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPI
DKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQ
SVIKTTERMTYSDVNRILTEDDAELKERYEPLVPMFKDMERLAEILRAKRMDRGAVDFDF
KEAKVLVDEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNA
EKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSMKQAKYDP
QSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLINGQSDEATQEKWAERLPEIADHT
STMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVHVSFM
TDDYYRFDEQHFAMIGERTGNVYRIGDEITVKVVDVNKDERNIDFEIVGMKGTRRPRETT
GDRRKRGRPARKRVLNSNTPASPPKSEEKGEWFTKPKKKKKKRGFQNAPKQKRKKKK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagcgtttatggaccgtcttctcgcgtttatgaaggaagaggcgtacaag
ccccttaccgttcaggaactcgaggagatgctgaacatcacggaagcagatgaatttaaa
gagctggtaaaagcgctggtggcgctcgaggagacgggacagattgtccgcaccagaagc
aaccgctacgggcttccggaaaaaatgaatttagtaaaaggaaaaatttccgcgcatgca
aagggattcgcgtttctattgccggaggatacctctttaagcgacgtgtttattccgccg
aatgagctgaatacggccatgaacggcgatatcgtcatggtgcggctcaattcccagtca
agcggatcgagacaggaaggcacggtcatccgcatcctggaaagaagcatcgaccgcgtc
gtgggcacatacacagaaacgaaaagcttcggctttgtcatcccggatgataagaaaatc
acgagtgatatttttattccgaaacatgccaataacggcgctgcggaaggccataaagtc
gtcgtcaaactgacaagctaccctgaaggcagaatgaacgccgaaggagaaatcgttgaa
atactcggccataaaaatgatccggggatcgatattttatcaattatccataagcacggc
ctgccgggggactttccggctgaagtgatggagcaggcaacaagcacgcccgattccatc
gatgaaaaagacatcaaagaccgccgtgatctccgcgatcaggtcattgtcaccattgac
ggcgcggatgcgaaggatctggatgacgccgtcaccgtgacaaagcttgataacggcagc
tacaagctcggcgtccatattgccgacgtcagccattacgtcacggagaattccccgatt
gacaaagaagcgctggaaagagggacaagcgtatacttggttgaccgggtcattccgatg
attcctcacagactgtctaacggaatctgttctttaaatccgaaggtcgaccggctgacg
ctttcctgcgaaatgacaatcaaccagcaggggcaggtaacagagcacgagatcttccaa
agcgtcattaaaacgacggaaagaatgacctattcagatgtcaaccggattctcacagaa
gacgacgccgagctgaaagaaagatatgagccgctcgtcccgatgtttaaagacatggaa
cgtctggcggaaattctccgggcgaaacggatggaccgcggcgccgtggattttgatttc
aaagaggcgaaggtcctcgtcgatgaggaaggcgccgtaaaagacgtcgtcatcagagag
cgctcagtagcggaaaagctgattgaagaattcatgcttgtcgcaaacgaaacggtggcc
gagcacttccattggatgaacgtgccgtttatttaccggattcacgaagagccgaacgcc
gaaaaactgcaaaagtttctggagttcgtcacgacattcggttatatcgtcaaagggaaa
gccggagacattcacccgcgcgcgctgcaaagcattcttgatgaagtacgggaccgtccg
gaagaaacggtgatttcaacggtcatgctccgttccatgaagcaggcgaaatacgacccg
caaagcctgggccatttcgggctggcgactgagttttatacgcacttcacatcgccgatc
cgccgttatcctgacttaatcgttcacaggctgatcagaacgtatttgatcaacggacaa
tcggacgaagcgactcaagaaaagtgggccgaacgccttccggaaatcgctgatcatacg
tcaacgatggaacgtcgtgccgttgatgcagagcgggaaacggacgatctgaaaaaagcg
gaatatatgcttgataaaatcggcgaggaatttgacggcatgatcagttccgtcacgaat
ttcggaatgtttgtcgagctgccgaatacgattgaagggcttgtgcacgtcagctttatg
acggatgattattaccgttttgacgagcagcatttcgccatgatcggtgaacgcacgggc
aacgtttaccgcatcggagacgaaatcacggtcaaagtcgtcgacgtcaataaagatgag
agaaacatcgactttgaaattgtcggcatgaaaggcacccgccgtccgagagaaacgaca
ggcgaccgcagaaaacgcggcagaccggcgcggaaacgcgtgttaaacagcaataccccg
gcttcaccgccgaaatcggaggaaaaaggggaatggtttacaaaaccgaagaagaaaaag
aaaaaacgcggtttccaaaacgcgccgaaacaaaaacgcaaaaagaagaagtaa
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