Burkholderia sp. YI23: BYI23_A015080
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Entry
BYI23_A015080 CDS
T01711
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
byi
Burkholderia sp. YI23
Pathway
byi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
byi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BYI23_A015080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
byi03400
]
BYI23_A015080
Enzymes [BR:
byi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BYI23_A015080
DNA repair and recombination proteins [BR:
byi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BYI23_A015080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
HC2
Motif
Other DBs
NCBI-ProteinID:
AET89346
LinkDB
All DBs
Position
1:complement(1697008..1699722)
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AA seq
904 aa
AA seq
DB search
MAEKLDTYQRMRRFDKTPEPSGAAKRSGGARAKKTATKKTAKRAMSFVIQEHDARRLHYD
FRLELDGTLKSWAVPKGPSLDPSVKRLAVHVEDHPLDYGSFEGEIPEGNYGAGSVIVWDR
GTWAPQSGSVEEAAREYEKGKLKFVLDGEKLHGGWTLVKSHMRGSGDKEQWLLIKERDDE
ARSEAEYDILLKKPGSVLSESLGARAKNGALIDRAERKAAAKKAPARRTAARKQSDGHAH
PDIVANRSAESLRTLSHEPAIEGAVKAKLPATFKPQLATLVDAAPPGEDWAYEIKFDGYR
MLARIETTRGKRDIRIYTRNGNDWSAKFSKQVKALEKLDIESGWLDGEAVVLDERGLPDF
QALQNAFDAGRPQDIVVYFFDVPYLNGYDLRHVPLVQRRAMLKALIEPVDDSVLRYSQDF
AFHADELLKSACDMALEGIIGKRIDSAYVPGRGNSWIKLKCRRRQEFVIGGYSEPSGSRG
EFGALLLGVYDKSGKLQYAGRVGTGFDQKMLVAVKKELDKRETPRMPFASEPQERSRTPV
HWVKPELVAECNFAEWTKERIVRQASFVSLRDDKPARQIVKEEPVAAKKVAAKKTAAVKK
AKASSAEVEGVKISHPDRVIDKSAGYTKLDVVEYYASVAKWMLPHLKDRPVSLVRAPEDI
GGELFFQKHSAKLAIPHITQHPDIDPGHPPLLTIESSKALVGTAQMGTIELHTWNAVASN
IEKPDRMVFDLDPGEGVGWERMIEAAKLTKELLAELGLTSFCKTSGGKGFHVVVPLRKHA
DWDEMKAFSQAVAQHMANALPKFFSAKMGMQNRKGKIFIDYLRNNRGSSTVAAFSLRARP
GLGASMPLSWDELDDVTSGDQWNIGNARERLDALKRDPWADYEKARQRLTAEMKKRLGMN
GERK
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggccgagaaactcgacacctatcagcggatgcggcgtttcgacaagacgccggaaccg
tccggcgcggcgaagcgcagcggcggcgcgcgcgcgaaaaagaccgcgacgaagaagacc
gcaaagcgggccatgtccttcgtcatccaggaacacgacgcgcgccgtctgcattacgat
ttccggctcgaactcgacggcacgctcaagtcatgggcggtgcccaaaggcccgagcctc
gatccatcggtgaagcgtctcgcggtgcatgtcgaggatcatccgctcgattacgggtcg
ttcgaaggcgagattccggaaggcaactacggcgcgggcagcgtgatcgtgtgggatcgc
gggacctgggcgccgcagtcgggcagcgtggaggaagcggcgcgcgaatacgagaagggc
aagctcaaattcgtgctcgacggcgaaaagctgcatggcggctggacgctcgtgaaaagc
cacatgcgcggcagcggcgacaaggagcagtggctgctcatcaaggaacgcgacgacgaa
gcgcggtccgaagccgagtacgacatcctgctgaaaaaaccgggcagcgtgctttccgaa
tcgctcggcgcgcgcgcgaagaacggcgcgctcatcgaccgtgccgaacgcaaggccgcc
gcgaagaaagcgcccgcgcgcaggacagcggcgcgcaaacagtcggacgggcacgcgcat
ccggatatcgtcgcgaaccgcagcgcggaatcgttgcgcaccttgtcgcacgagccggcc
atcgaaggcgcggtcaaggcgaaactgcccgcgacgttcaagccgcagctcgcgacgctc
gtcgatgccgcgccgcccggcgaagactgggcctacgaaatcaagttcgatggttatcgc
atgctggcgcgcatcgaaacgacccgcggcaagcgcgacatccgcatctatacgcgcaac
ggcaacgactggagcgcgaagttctcgaagcaggtgaaggcgctcgagaagctcgatatc
gaaagcggctggctcgacggcgaagccgtggtgctcgacgagcgcggcctgccggatttt
caggcgctgcaaaacgccttcgatgcgggacggccgcaggacatcgtcgtgtatttcttc
gatgtgccgtatctgaacggctacgacctgcgtcacgttccgctcgtgcagcggcgcgcg
atgctgaaggcgctcatcgagccggtcgacgattcggtgctgcgctattcgcaggacttc
gcctttcatgcggacgagctgctcaagagcgcgtgcgacatggcgctcgaagggatcatc
ggcaagcgcatcgacagcgcgtatgtgccggggcgcggcaattcctggatcaagctcaag
tgcagacgccgccaggagttcgtgatcggcggttattcggagccgtcgggcagccgcggg
gagttcggcgcgcttctgctcggcgtgtacgacaagagcggcaagctgcaatacgcgggg
cgcgtgggcaccggcttcgatcagaagatgctcgtcgcggtgaagaaggagctcgacaag
cgcgagacgccgcgcatgccgtttgcgagcgagccgcaggaacgcagccgcacgcccgtg
cattgggtgaagcccgaactcgtggccgagtgcaatttcgcggaatggaccaaggagcgc
atcgtgcgacaagcatcgttcgtcagtctgcgtgacgataaacccgcgcgtcagatcgtg
aaggaagagccggtggcggcgaaaaaagtggcggcgaagaaaaccgctgccgtgaaaaag
gccaaggcaagctcggccgaagtcgaaggcgtgaagatcagtcatcccgatcgtgtgatc
gataaatccgccggctacaccaagctcgatgtcgtcgaatattacgcatcggtcgccaag
tggatgctgccgcatctcaaggatcgtccggtgtcgctcgtgcgcgcgcccgaggatatc
ggcggcgagctgttctttcagaagcacagcgcgaagctcgcgattccgcatatcacgcag
catcccgatatcgatccgggacatccgccgctgctcacgatcgaatcgtcgaaagcgctc
gtcggcaccgcgcagatgggcacgatcgagctgcatacgtggaatgcggtggcatcgaac
atcgagaagccggatcgcatggtgttcgatctcgaccccggcgaaggcgtgggctgggaa
cgcatgatcgaggctgcgaagctcacgaaggaactgctcgcggaactcgggctcacatcg
ttttgcaagacgagcggcggcaagggatttcatgtggtcgtgccgctcaggaagcacgcg
gactgggacgagatgaaggcgttttcgcaggcggtcgcgcagcacatggcgaacgcgctg
cccaagttcttctcggcgaagatgggcatgcagaaccgcaagggcaagatcttcatcgac
tatctgcgcaacaaccgcggttcgagcacggtcgcggcattctcgctgcgcgcgcgcccc
gggctcggcgcgtcgatgccgctatcgtgggacgagctcgatgacgtcacgagcggcgat
caatggaacatcggcaacgcgcgcgagcggctcgacgcattgaagcgcgatccgtgggcg
gattacgagaaggcgcgtcaaaggctcaccgcggagatgaagaagcggctcggcatgaac
ggcgagcgcaagtga
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