KEGG   Burkholderia sp. YI23: BYI23_A015080Help
Entry
BYI23_A015080     CDS       T01711                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
byi  Burkholderia sp. YI23
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:byi00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    BYI23_A015080
Enzymes [BR:byi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BYI23_A015080
DNA repair and recombination proteins [BR:byi03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BYI23_A015080
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
1:complement(1697008..1699722)
Genome map
AA seq 904 aa AA seqDB search
MAEKLDTYQRMRRFDKTPEPSGAAKRSGGARAKKTATKKTAKRAMSFVIQEHDARRLHYD
FRLELDGTLKSWAVPKGPSLDPSVKRLAVHVEDHPLDYGSFEGEIPEGNYGAGSVIVWDR
GTWAPQSGSVEEAAREYEKGKLKFVLDGEKLHGGWTLVKSHMRGSGDKEQWLLIKERDDE
ARSEAEYDILLKKPGSVLSESLGARAKNGALIDRAERKAAAKKAPARRTAARKQSDGHAH
PDIVANRSAESLRTLSHEPAIEGAVKAKLPATFKPQLATLVDAAPPGEDWAYEIKFDGYR
MLARIETTRGKRDIRIYTRNGNDWSAKFSKQVKALEKLDIESGWLDGEAVVLDERGLPDF
QALQNAFDAGRPQDIVVYFFDVPYLNGYDLRHVPLVQRRAMLKALIEPVDDSVLRYSQDF
AFHADELLKSACDMALEGIIGKRIDSAYVPGRGNSWIKLKCRRRQEFVIGGYSEPSGSRG
EFGALLLGVYDKSGKLQYAGRVGTGFDQKMLVAVKKELDKRETPRMPFASEPQERSRTPV
HWVKPELVAECNFAEWTKERIVRQASFVSLRDDKPARQIVKEEPVAAKKVAAKKTAAVKK
AKASSAEVEGVKISHPDRVIDKSAGYTKLDVVEYYASVAKWMLPHLKDRPVSLVRAPEDI
GGELFFQKHSAKLAIPHITQHPDIDPGHPPLLTIESSKALVGTAQMGTIELHTWNAVASN
IEKPDRMVFDLDPGEGVGWERMIEAAKLTKELLAELGLTSFCKTSGGKGFHVVVPLRKHA
DWDEMKAFSQAVAQHMANALPKFFSAKMGMQNRKGKIFIDYLRNNRGSSTVAAFSLRARP
GLGASMPLSWDELDDVTSGDQWNIGNARERLDALKRDPWADYEKARQRLTAEMKKRLGMN
GERK
NT seq 2715 nt NT seq  +upstreamnt  +downstreamnt
atggccgagaaactcgacacctatcagcggatgcggcgtttcgacaagacgccggaaccg
tccggcgcggcgaagcgcagcggcggcgcgcgcgcgaaaaagaccgcgacgaagaagacc
gcaaagcgggccatgtccttcgtcatccaggaacacgacgcgcgccgtctgcattacgat
ttccggctcgaactcgacggcacgctcaagtcatgggcggtgcccaaaggcccgagcctc
gatccatcggtgaagcgtctcgcggtgcatgtcgaggatcatccgctcgattacgggtcg
ttcgaaggcgagattccggaaggcaactacggcgcgggcagcgtgatcgtgtgggatcgc
gggacctgggcgccgcagtcgggcagcgtggaggaagcggcgcgcgaatacgagaagggc
aagctcaaattcgtgctcgacggcgaaaagctgcatggcggctggacgctcgtgaaaagc
cacatgcgcggcagcggcgacaaggagcagtggctgctcatcaaggaacgcgacgacgaa
gcgcggtccgaagccgagtacgacatcctgctgaaaaaaccgggcagcgtgctttccgaa
tcgctcggcgcgcgcgcgaagaacggcgcgctcatcgaccgtgccgaacgcaaggccgcc
gcgaagaaagcgcccgcgcgcaggacagcggcgcgcaaacagtcggacgggcacgcgcat
ccggatatcgtcgcgaaccgcagcgcggaatcgttgcgcaccttgtcgcacgagccggcc
atcgaaggcgcggtcaaggcgaaactgcccgcgacgttcaagccgcagctcgcgacgctc
gtcgatgccgcgccgcccggcgaagactgggcctacgaaatcaagttcgatggttatcgc
atgctggcgcgcatcgaaacgacccgcggcaagcgcgacatccgcatctatacgcgcaac
ggcaacgactggagcgcgaagttctcgaagcaggtgaaggcgctcgagaagctcgatatc
gaaagcggctggctcgacggcgaagccgtggtgctcgacgagcgcggcctgccggatttt
caggcgctgcaaaacgccttcgatgcgggacggccgcaggacatcgtcgtgtatttcttc
gatgtgccgtatctgaacggctacgacctgcgtcacgttccgctcgtgcagcggcgcgcg
atgctgaaggcgctcatcgagccggtcgacgattcggtgctgcgctattcgcaggacttc
gcctttcatgcggacgagctgctcaagagcgcgtgcgacatggcgctcgaagggatcatc
ggcaagcgcatcgacagcgcgtatgtgccggggcgcggcaattcctggatcaagctcaag
tgcagacgccgccaggagttcgtgatcggcggttattcggagccgtcgggcagccgcggg
gagttcggcgcgcttctgctcggcgtgtacgacaagagcggcaagctgcaatacgcgggg
cgcgtgggcaccggcttcgatcagaagatgctcgtcgcggtgaagaaggagctcgacaag
cgcgagacgccgcgcatgccgtttgcgagcgagccgcaggaacgcagccgcacgcccgtg
cattgggtgaagcccgaactcgtggccgagtgcaatttcgcggaatggaccaaggagcgc
atcgtgcgacaagcatcgttcgtcagtctgcgtgacgataaacccgcgcgtcagatcgtg
aaggaagagccggtggcggcgaaaaaagtggcggcgaagaaaaccgctgccgtgaaaaag
gccaaggcaagctcggccgaagtcgaaggcgtgaagatcagtcatcccgatcgtgtgatc
gataaatccgccggctacaccaagctcgatgtcgtcgaatattacgcatcggtcgccaag
tggatgctgccgcatctcaaggatcgtccggtgtcgctcgtgcgcgcgcccgaggatatc
ggcggcgagctgttctttcagaagcacagcgcgaagctcgcgattccgcatatcacgcag
catcccgatatcgatccgggacatccgccgctgctcacgatcgaatcgtcgaaagcgctc
gtcggcaccgcgcagatgggcacgatcgagctgcatacgtggaatgcggtggcatcgaac
atcgagaagccggatcgcatggtgttcgatctcgaccccggcgaaggcgtgggctgggaa
cgcatgatcgaggctgcgaagctcacgaaggaactgctcgcggaactcgggctcacatcg
ttttgcaagacgagcggcggcaagggatttcatgtggtcgtgccgctcaggaagcacgcg
gactgggacgagatgaaggcgttttcgcaggcggtcgcgcagcacatggcgaacgcgctg
cccaagttcttctcggcgaagatgggcatgcagaaccgcaagggcaagatcttcatcgac
tatctgcgcaacaaccgcggttcgagcacggtcgcggcattctcgctgcgcgcgcgcccc
gggctcggcgcgtcgatgccgctatcgtgggacgagctcgatgacgtcacgagcggcgat
caatggaacatcggcaacgcgcgcgagcggctcgacgcattgaagcgcgatccgtgggcg
gattacgagaaggcgcgtcaaaggctcaccgcggagatgaagaagcggctcggcatgaac
ggcgagcgcaagtga

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