Burkholderia sp. YI23: BYI23_E001150
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Entry
BYI23_E001150 CDS
T01711
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
byi
Burkholderia sp. YI23
Pathway
byi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
byi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BYI23_E001150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
byi03400
]
BYI23_E001150
Enzymes [BR:
byi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BYI23_E001150
DNA repair and recombination proteins [BR:
byi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BYI23_E001150
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AET95276
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Position
byi_2p:106993..108888
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AA seq
631 aa
AA seq
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MPAAIAPQLAALAKRPPAIGEWAYEIKFDGYRLMCRLEDGRARLFTRGGHDWASRMPALA
REIETLPVETAWLDGEVVVLNDSGLPDFNALQNAFDRRSTAELTYFVFDLLFLNGRDLRG
LPLRDRRALLIPLMADVSSDRIRISESFTDDPQSLLASACRMRLEGIMGKRLDAPYRSGR
STDWIKLKCYQKQEFVVGGLTRTAGARSGIRSLMIGVHERDGSLRYAGTVKAELRPTQRT
ELEQKAAALVTTEPPFYNPPARERGREFVWLTPEIVVEVSFLEWTPGGEARHPVFKGLRY
DKPASSITDEPVIDVDEQGDRTREGAFERGQSSRASFVAGVKVSNANRVIDKESGLRKIE
LVRYYDEIAEFALPYLRDRPVSLVRAPGGLQGELFFQKHEERSAIPGISRLPSDFFPGHQ
PLLVIDTREALVGVAQMNAVEMHSWNASQPDLDHPDRFVLDLDPDPALSWQMMTDAATLA
KVLLDEIGLKSFIKTSGGKGYHIVVPVTRRQGWEEIKVFSQSVARYMARLMPERFSAVLG
PKNRVGKIFIDYLRNSKGASTAAIFSARARPGLGVSMPIAWEELNDVASADQWNITNAPH
RMRSLGVDPWAGFHRTRQGITVAMRKAVGMK
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
ttgcctgccgcgatcgcgccgcaactggccgcactagccaagaggcctccggctatcggt
gagtgggcctacgagataaagttcgacggctaccgcctaatgtgcaggcttgaggatggc
cgggcacggctctttacgcgtggtggccatgactgggccagcaggatgcctgcattggcc
cgcgagatagagacgctaccagtcgagacagcatggctcgacggagaggtagtcgtgctc
aacgacagcggactgcccgacttcaacgcgctacaaaacgccttcgatcgccgaagcacg
gcggagctgacctacttcgtcttcgaccttctttttctcaacggtcgcgatctgcgcggg
ttgcctcttcgtgacaggcgggcgttgcttatccctttgatggcggatgtttcgagcgac
aggattcggatcagtgaatctttcactgacgacccgcaatcattgctggcatccgcctgc
cggatgcgcctcgaaggcatcatgggtaagcgccttgatgctccgtatcgttccggccgc
tcgactgattggatcaagctaaagtgctatcagaagcaagagtttgtcgttggcggtctc
acaagaacggccggtgcgcgatctggaattcgctcccttatgattggcgttcacgagcgc
gatggatcgctgagatacgctgggacggttaaggcggaattgcggccgacacaacgaacg
gaacttgagcagaaagccgctgcgctcgtaaccactgagcctccgttctataacccccca
gcgcgcgagcgtggtagagaattcgtatggctgacgccggagattgtcgttgaggtgtcg
tttctcgaatggacacctggtggagaagcgaggcatcccgtcttcaaaggcttacggtat
gacaagcctgcgtcatcgatcaccgatgaaccggtgatcgatgtagacgagcagggcgac
cgtacaagagaaggggcgttcgagcgagggcaaagtagccgcgcttcgttcgtcgcgggc
gtgaaggtttctaacgcgaatcgggtcatcgataaggaatctggactccgaaagattgaa
cttgtgcgctactacgacgagatcgcagagttcgcgcttccataccttcgggaccgtccc
gtgtccctcgtacgagcgccaggcgggctacagggcgagcttttcttccagaagcatgag
gagcgctctgcgatacccggcattagccggctgccttcagacttctttcctggacatcaa
cctttgttagtgattgacacgcgagaagcgctcgttggtgtcgcgcagatgaacgcggtg
gagatgcacagttggaatgcgtcccagcccgacttggaccatcccgacagattcgtgctt
gacctcgatcccgatccggctctttcgtggcaaatgatgacggacgccgcgacgctcgcg
aaggttttgctcgacgagatcgggctgaagagtttcatcaagacaagtggggggaaggga
tatcacatcgttgtgccagtcacgcgtagacaaggctgggaggaaatcaaggtgttctcg
cagtcggtcgcgaggtatatggcgcggctgatgccggagcgattttcggcggttctcgga
ccaaagaatcgcgtggggaagatcttcatcgactaccttcgcaacagcaaaggagcgagt
actgccgcaattttctcagctcgcgcacggcccggattgggcgtctcgatgccgattgcc
tgggaggagctgaacgacgtggcgtcagccgatcaatggaacattacaaacgcgccgcac
cgcatgcggtcgttgggcgttgatccttgggccggatttcatcgaacgcggcaaggcata
acagtcgcgatgcgcaaggctgtcggaatgaagtga
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