KEGG   Catenulispora acidiphila: Caci_1425Help
Entry
Caci_1425         CDS       T00967                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cai  Catenulispora acidiphila
Pathway
cai03030  DNA replication
cai03410  Base excision repair
cai03420  Nucleotide excision repair
cai03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cai00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    Caci_1425
   03410 Base excision repair
    Caci_1425
   03420 Nucleotide excision repair
    Caci_1425
   03430 Mismatch repair
    Caci_1425
Enzymes [BR:cai01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Caci_1425
    6.5.1.6  DNA ligase (ATP or NAD+)
     Caci_1425
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Caci_1425
DNA replication proteins [BR:cai03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Caci_1425
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Caci_1425
DNA repair and recombination proteins [BR:cai03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Caci_1425
   NER (nucleotide excision repair)
    Other NER factors
     Caci_1425
   MMR (mismatch exicision repair)
    Other MMR factors
     Caci_1425
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ACU70348
JGI: Caci_1425
UniProt: C7Q8T3
LinkDB All DBs
Position
complement(1622309..1623892)
Genome map
AA seq 527 aa AA seqDB search
MRLHDVATTSAAVAETSARSAKIALLAERLRTATPEEVAVAVHYLSGELPQRQIGVGWAT
LRELPAPADDSGGSNSSDGSDGSASTAGLEVAEVDRILEEIGKTTGAGSQARRRDLLTAL
FARATAEEQAFLRRLLTGELRQGALDGVMADAVAKAADVPAAEVRRAAMFGGDLAAAAQT
ALRAGVPGLREVGLVVGRPIQPMLAGTAEDVPTALAKASPAALEWKLDGIRVQIHRDGDR
VQVFTRSLDDITERLPEAVALARSLQVTSAVLDGEALALAADGRPRPFQETASRTGSRRD
VERMREQIPLTVFLFDLLHLDGRDLVDLPSRERSDLLASIAPPAAVAPRLVTDDADAAEA
FAKDALDRGHEGVVVKSLDALYSAGRRGSGWLKVKPVHTLDLVVLAAEWGHGRRRGWLSN
LHLAARDPETGGFVMLGKTFKGMTDELLTWQTERLRALQTSADDFAVHVRPELVVEVAFD
GVQRSSRYPGGVTLRFARVVRYREDKRAEDADTIDAVRAIGQGQEQA
NT seq 1584 nt NT seq  +upstreamnt  +downstreamnt
atgcgcttgcacgatgtggcgaccacctccgccgcggtcgccgagacctcggcccgctcg
gccaagatcgccctgctggccgagcggctccgcacggcgacgccggaggaggtggcggtc
gccgtccactatctctccggcgagctgccccagcggcagatcggcgtcggctgggcgaca
ctgcgcgagctgcccgcgccggctgacgactccggtggctccaacagttccgacggctcc
gacggctccgccagcaccgccggactggaagtcgccgaggtcgaccggatcctggaagag
atcggcaagaccaccggcgccggctcgcaggcccgccgccgcgatctgctgaccgcgctg
ttcgcccgcgccaccgccgaggagcaagccttcctgcgccggctgctcaccggcgagctg
cgccagggcgcgctggacggcgtcatggccgacgcggtcgcgaaagccgccgacgtcccg
gccgccgaggtgcgccgggcggcgatgttcggcggcgacctggcagcagcggcgcagacc
gcgctgcgggccggcgtgccggggctgcgcgaggtcggtctggtggtcgggcgcccgatc
cagccgatgctggccgggacggcagaggacgtccccaccgcgctggcgaaggcttcaccg
gcggcgctggaatggaagctcgacggaatcagggtccagatccaccgcgacggcgaccgc
gtccaggtcttcacccgcagcctggacgacatcaccgagcgcctgccggaggcggtcgcc
ctggcacgctcgctccaggtcacctccgcggtcctcgacggcgaggcgctggccctggcc
gccgacggccgtccgcggccgttccaggagaccgcgagccgcaccggcagccgccgcgac
gtggagcggatgcgcgagcagatcccgctgaccgtcttcctgttcgacctgctgcacctc
gacggccgcgacctggtcgacctgccctcccgggaacgctcggacctgctcgcctcgatc
gccccgccggctgccgtggcgccgcgcctggtcaccgacgacgccgacgcggcggaggcg
ttcgcgaaagacgcgctggaccgcgggcacgaaggcgtggtcgtgaaatctctcgacgcg
ctctacagcgcgggccgccgcggatcgggatggctgaaggtcaagccggtccacaccctc
gatctggtggtcctcgccgccgagtggggacacggccggcgccgcggctggctcagcaac
ctgcatctggccgcgcgcgaccccgagaccggcgggttcgtcatgctcggcaagacgttc
aagggcatgaccgacgaactcctcacctggcagaccgagcgcctgcgcgcgttgcagacc
tctgccgacgatttcgccgtgcacgtacggcccgagttggtcgtcgaggtggcgttcgac
ggcgtgcagcgcagttcgcgctatcccggcggcgtcacgctgcggttcgcgcgcgtggtc
cggtatcgcgaagacaagcgcgctgaggacgccgatacgatcgatgcggtgcgagctatc
gggcaggggcaggagcaggcttag

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