Catenulispora acidiphila: Caci_5248
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Entry
Caci_5248 CDS
T00967
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cai
Catenulispora acidiphila
Pathway
cai03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Caci_5248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cai03400
]
Caci_5248
Enzymes [BR:
cai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Caci_5248
DNA repair and recombination proteins [BR:
cai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Caci_5248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
RNA_ligase
DUF6643
Motif
Other DBs
NCBI-ProteinID:
ACU74107
UniProt:
C7Q6S2
LinkDB
All DBs
Position
6043598..6045085
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AA seq
495 aa
AA seq
DB search
MDPDRLHAYRAKRDAARTPEPVPEAAPETAPEAKPRTRRGRKPIFVVQEHRATALHWDFR
LERDGVLVSWALPKGVPTDPKRNHRAVHTEDHPVEYADFTGRIPAGEYGAGTVATYDRGT
YVVEKWTDDEVKVELTGERLSGHYTLFRTGGSDWMIHREKGQDPDFAAVPDDLRPMLAIP
GTAPAGAGWACEFKWDGIRALCRVEGGRARLRSRNGNDLSETYPELKALAKTVSSAQLLL
DGEIIALDEDGKVSFGALQTRFGTSGSEAARLSRTNPASYLVFDLLHLDGRSTLDLPYKD
RRELLESLELSGPHWQTPPSFPDTPVADVLEAARAAGLEGVVAKRLDSTYQPGTRSPAWR
KVKLTESQSAVIGGFTPLKSQGAATGRAARGSQIGALLLGVPDEAGRLRYVGKVGSGFTE
QDRRVLLEALSELAVAESPFATAVDAVDARVATWVEPVVVAEVTFGEWTSKGRLRHPVFK
GIRTDKDAAEVVRES
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtggacccggaccgcctgcacgcctaccgcgccaagcgcgacgcggcgcgcacgcccgag
ccggtgcccgaggcagcacctgagacagcgcccgaggcgaaaccgaggacgcgcagaggc
aggaaaccgatcttcgtggtccaggaacaccgcgccaccgccctgcactgggacttccgc
ctggagcgtgacggcgtgctggtctcctgggcgctaccgaagggcgtccccaccgacccc
aagcgcaaccaccgcgccgtgcacaccgaggaccatccggtcgaatacgccgacttcacc
ggacgcatcccggccggcgaatacggcgcgggaaccgttgccacgtatgaccgcggcacg
tacgtagtggagaagtggaccgacgacgaggtcaaagtcgaactgacgggcgagcgcctc
tccggccactacaccctgttccgcaccggcggctccgactggatgatccaccgcgagaag
ggtcaggaccctgacttcgcggcggtccccgacgacctgcggccgatgctggcgatcccc
ggcaccgccccggccggcgccggctgggcctgcgagttcaagtgggacggtatcagggcc
ctgtgccgggtcgagggcggccgggcccggctgcgctcgcgcaacggcaacgacctcagc
gaaacctaccccgagctcaaagccctggccaagacggtcagcagcgcgcagctgctactg
gacggcgagatcatcgcgctggacgaggacggcaaggtcagcttcggggcgttgcagacc
cgcttcggcaccagcggatcggaggcggcgcggctgtcccggacgaatccggcctcgtac
ttggtcttcgacctgctgcatctggacggccgctcgaccctggacctgccctacaaggac
cgccgggagctgctggaatccctggagctgtccggaccgcactggcagaccccgccttcg
ttccctgacacacccgtggccgacgtgctggaggcggcgcgcgccgccgggctggaaggc
gtggtggccaagcggctggattcgacgtaccagcccgggacgcgctcgccagcgtggcgc
aaggtcaagctgaccgagtcccagtcggcggtgatcggcggcttcacgccgttgaagagc
cagggcgccgccaccggacgtgcggcccggggatcccagatcggcgcgctgctgctgggc
gtgccggacgaggccgggcggctgcgctacgtcggcaaggtgggcagcggcttcaccgag
caggatcgcagggttctgctggaggcgctgtcggagctggcggtggccgagagtccgttc
gccactgccgtggacgccgtcgacgcgcgcgtggcgacgtgggtcgagccggtggtggtg
gccgaggtgacgttcggggagtggacgtcgaagggccggctgcgccacccggtgttcaag
ggcatccgcaccgacaaggacgccgcggaggtggtccgtgagtcctga
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