Catenulispora acidiphila: Caci_5249
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Entry
Caci_5249 CDS
T00967
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cai
Catenulispora acidiphila
Pathway
cai03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Caci_5249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cai03400
]
Caci_5249
Enzymes [BR:
cai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Caci_5249
DNA repair and recombination proteins [BR:
cai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Caci_5249
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACU74108
UniProt:
C7Q6S3
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All DBs
Position
6045075..6045953
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AA seq
292 aa
AA seq
DB search
MSPDARASQTVEIDGRSVKLTNLDKVLYPDDGFTKGEILDYYAHIAPVMLPHLAGRPVTF
IRYPDGVDTSGFFAKHAPAHRPSWIRTADIAATSSGKQVEYVLIDDLPSLMWAANLAAIE
FHVPQWRVSDQQHHDLLVLDLDPGAPATVVDCVRVALAARDLLATHDLELRAKTSGAKGL
HLYAALTDVTGEQARELAHTIARALEGTHPDLVVSSMSKAERPGKVFVDWSQNTHAKTTI
APYSLRATPHPAVSTPVTWEQLAAAKHPEDLRFPPARALEQVAEHGDLLSGL
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcctgacgcgcgagcttcgcagaccgtcgagatcgacggccgctcggtgaagctg
acgaacctggacaaggtcctgtatccggacgacggcttcaccaagggcgagatcctcgac
tactacgcacacatcgcaccggtgatgctgccgcacctggccggccgcccggtgacgttc
atccgctacccggacggcgtggacacatcagggttcttcgccaagcacgccccggcgcac
cgcccgtcctggatccgcaccgccgacatcgccgccaccagctccggcaagcaggtcgag
tacgtcctcatcgacgacctgccctccctgatgtgggcagcgaacctggccgcgatcgag
ttccacgtaccccaatggcgcgtctcggaccagcaacaccacgacctgctggtcctagac
ctggacccaggcgcaccggccacagtcgtggactgcgtccgcgtcgcactcgccgcccgc
gacctgttggccacgcacgacctggagctgcgcgcaaaaacctccggagccaagggcctc
cacctgtacgcagcactgaccgacgtcaccggcgagcaagcccgcgaactcgcacacacc
atcgcccgcgccctggaaggcacgcaccccgacctggtggtatcgagcatgtccaaggcg
gaacgccccggaaaggtattcgtcgactggtcacaaaacacccacgccaagaccaccatc
gcgccctactccctacgcgccacaccgcacccagcggtgtcgaccccggtgacctgggag
caactagcggcagcaaaacatcccgaggacctgcgcttccccccggcacgcgcactggaa
caggtcgccgagcacggcgatttactatcagggctgtga
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