KEGG   Catenulispora acidiphila: Caci_5249Help
Entry
Caci_5249         CDS       T00967                                 

Definition
(GenBank) DNA polymerase LigD, polymerase domain protein
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cai  Catenulispora acidiphila
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cai00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    Caci_5249
Enzymes [BR:cai01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Caci_5249
DNA repair and recombination proteins [BR:cai03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Caci_5249
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-ProteinID: 
JGI: 
UniProt: 
LinkDB All DBs
Position
6045075..6045953
Genome map
AA seq 292 aa AA seqDB search
MSPDARASQTVEIDGRSVKLTNLDKVLYPDDGFTKGEILDYYAHIAPVMLPHLAGRPVTF
IRYPDGVDTSGFFAKHAPAHRPSWIRTADIAATSSGKQVEYVLIDDLPSLMWAANLAAIE
FHVPQWRVSDQQHHDLLVLDLDPGAPATVVDCVRVALAARDLLATHDLELRAKTSGAKGL
HLYAALTDVTGEQARELAHTIARALEGTHPDLVVSSMSKAERPGKVFVDWSQNTHAKTTI
APYSLRATPHPAVSTPVTWEQLAAAKHPEDLRFPPARALEQVAEHGDLLSGL
NT seq 879 nt NT seq  +upstreamnt  +downstreamnt
gtgagtcctgacgcgcgagcttcgcagaccgtcgagatcgacggccgctcggtgaagctg
acgaacctggacaaggtcctgtatccggacgacggcttcaccaagggcgagatcctcgac
tactacgcacacatcgcaccggtgatgctgccgcacctggccggccgcccggtgacgttc
atccgctacccggacggcgtggacacatcagggttcttcgccaagcacgccccggcgcac
cgcccgtcctggatccgcaccgccgacatcgccgccaccagctccggcaagcaggtcgag
tacgtcctcatcgacgacctgccctccctgatgtgggcagcgaacctggccgcgatcgag
ttccacgtaccccaatggcgcgtctcggaccagcaacaccacgacctgctggtcctagac
ctggacccaggcgcaccggccacagtcgtggactgcgtccgcgtcgcactcgccgcccgc
gacctgttggccacgcacgacctggagctgcgcgcaaaaacctccggagccaagggcctc
cacctgtacgcagcactgaccgacgtcaccggcgagcaagcccgcgaactcgcacacacc
atcgcccgcgccctggaaggcacgcaccccgacctggtggtatcgagcatgtccaaggcg
gaacgccccggaaaggtattcgtcgactggtcacaaaacacccacgccaagaccaccatc
gcgccctactccctacgcgccacaccgcacccagcggtgtcgaccccggtgacctgggag
caactagcggcagcaaaacatcccgaggacctgcgcttccccccggcacgcgcactggaa
caggtcgccgagcacggcgatttactatcagggctgtga

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