Caulobacter sp. K31: Caul_1769
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Entry
Caul_1769 CDS
T00651
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cak
Caulobacter sp. K31
Pathway
cak03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Caul_1769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cak03400
]
Caul_1769
Enzymes [BR:
cak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Caul_1769
DNA repair and recombination proteins [BR:
cak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Caul_1769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABZ70898
UniProt:
B0T3L2
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All DBs
Position
1868191..1870947
Genome browser
AA seq
918 aa
AA seq
DB search
MAQGQLAEYRRKRDFQKTAEPSGDAAVASAPHARFVIQKHDATRLHYDFRLEVDGVLKSW
AVTKGPSLDPADKRLSVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWAPEPGFEDV
AKALKKGELKFVLEGERLHGSWVLVRMNWDRNAKDGPKRQVGGGRSNWLLIKHNDEAARP
GEGAAVLEEDASIASGRTMSDIAAGKGKGPSAFILKTKGKGDAVWTSRTKAEREALQKEA
QDTRAVEPTPSRLPGEGQDPDSSGESAGRHLGPGLRRGDGDKATKKAKAKTAVLPDFIEP
QLCKSLDRPPSGPGWAHEIKFDGYRVQLRVEGGRATLRTRKGLDWTEKFAAIARAAADLP
DSIIDGEVVALDAAGQPDFAGLQAALSDGKTGDLIFFAFDLLAEGGEDLRALPLHERKAR
LKAMMGEDEPRLRFVDHFETAGDAVLLSACKLELEGIISKRLDAPYRSGRSETWTKAKCR
AGHDVVIGGYTTTGSAFRSLIAGVMRDGKLTHVGRIGTGFGRDKVGKLLPRLKALETDTS
PFEGKGAPRKADDIHWVKPELVAEIEYAGFTGDGSIRQASFKGLREDIPASEVQAEVPAK
AETAELATPTPKAAPKSQTIATAKTDSIVLGVTISKPDKPLWPDVDGAPGTKIDLARYMA
AIGDWMLPHVKGRPASIIRVPDGIGGETFFQRHAMRGMSSLIDLVSVKGDKQPYIQFNRV
EALIAAAQIAAVEIHPWNCQPGDPEVAGRLVFDLDPAPGVTFEDVIAGAREIRDRLEELG
LVSFCKTTGGKGLHVVTPLSDKVEWAVAKTFAREVCARMAADAPDKYLITMSKKAREGRI
FLDYLRNDRTSTAVAPLSARARPGATVSMPLNWTQVKAGLDPTKYTIRTVPDLIAKSRAW
EDYFDAAKPLKAAIKRLG
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggcccagggacaactcgccgaatatcgccgcaagcgcgatttccagaagaccgccgag
ccgagcggcgacgccgcggtcgcatccgcgccgcacgcccgcttcgtgatccagaagcac
gacgccacgcggctgcactacgactttcgcctggaggtcgacggggtgctgaagtcgtgg
gcggtgaccaaggggccgtccctggatcccgccgacaagcggctgtcggtggaggtcgag
gaccatccgctggactatggcgacttcgagggcacgatccccaagggccagtacggcggc
gggacggtgcagctgtgggaccgcggctattgggcgcccgaacccggcttcgaggatgtg
gccaaggcgctgaagaagggcgagctgaagttcgtgctggagggcgagcggctgcatggc
tcgtgggtgctggtgcggatgaactgggaccgcaacgccaaggatggccccaagcgacaa
gtagggggcgggcgctccaactggctgctgatcaagcacaatgacgaggccgcgcggccg
ggcgaaggggcggccgtgctggaggaggacgcctcgatcgcctcgggccggaccatgtcc
gacatcgccgccggcaagggcaagggaccgtcggcgttcatcctgaagaccaagggcaag
ggcgacgccgtctggacctcgcggaccaaggccgagcgcgaggcgctgcagaaggaggcg
caggacacgcgggcggtcgagcccaccccatcccgtcttcccggcgaaggccaggaccca
gattcatccggagagtcggcagggcgtcacctgggtcccggccttcgccggggagacgga
gacaaggcgaccaagaaagccaaggccaagaccgctgtcctgcccgacttcatcgaacct
caactctgcaagtctctggatcgcccgccgtccggacccggctgggcgcatgagattaag
ttcgacggctatcgcgtgcagttgcgcgtcgagggcggtcgggcgaccctgcgcacccgc
aagggtctggactggacagagaagttcgccgccatcgcgcgggccgccgcggacctgccc
gacagcattatagacggcgaggtcgtggccctggacgccgccggccagcccgacttcgcc
ggcctgcaggcggcgctgtcggacggcaagaccggcgacctgatcttcttcgctttcgac
ctgctggcggagggcggcgaggacctgcgcgccctgccgctgcacgaacgcaaggcgcgg
ctgaaggcgatgatgggcgaggacgagccgcgcctgcgtttcgtcgaccacttcgagacg
gccggggacgcggtgctgctgtcggcctgcaagctggaactggaaggcatcatctccaaa
cggctggacgccccataccgatcggggcgcagcgagacctggaccaaggccaagtgccgg
gccggccatgacgtggtgatcggtggctatacgacgaccggctcggcgttccgctcgctg
atcgccggcgtcatgcgcgacggaaagttgacccatgtgggccgaatcggcaccggcttt
ggccgcgacaaggtgggcaagctgctgccgaggctgaaggccttggagaccgacacctcg
ccgttcgaaggcaagggcgcgccgcgcaaggccgacgacatccactgggtgaagccggaa
ctggtggccgagatcgaatatgccggtttcacgggggacggctcgatccgccaggcctcg
ttcaagggcctgcgcgaggacattccagccagcgaggtccaggccgaggttccggccaag
gcggaaaccgccgagctggcgacgcccacccccaaggccgcgcccaagtcccagacgatc
gccaccgccaagaccgatagcatcgtgctgggcgtgacgatctccaagcccgacaagccg
ctgtggccggacgtcgacggcgcgccggggaccaagatcgacctggcccgctacatggcg
gcgatcggcgactggatgctgccgcacgtgaagggccggccggcctcgatcatccgggtt
cccgacggcatcggcggcgagaccttcttccaacgccacgccatgcgcgggatgtcgtcg
ctgatcgacctggtttcggtcaagggcgacaagcagccctacatccagttcaaccgggtc
gaggcgctgatcgccgccgcccagatcgccgccgtcgagatccatccctggaattgccag
ccgggcgatccggaggtggccggccgcctggtgttcgacctggatcccgcgccgggcgtc
accttcgaggacgtgatcgccggcgcgcgcgagatccgcgaccggctggaggaactgggc
ctggtcagtttctgcaagaccaccggcggcaagggcctgcacgtggtcacgcccttgtcc
gataaagtagagtgggctgtagcaaagaccttcgcccgcgaggtctgcgcccgcatggcc
gccgacgcgccggacaagtacctgatcaccatgagcaagaaggcgcgcgagggccgcatc
ttcctcgactacctgcgcaacgaccgcacctcgaccgccgtggcgccgctttcggcccgc
gccaggccgggggcgacggtgtcgatgccgctgaactggacccaggtaaaggcggggctg
gacccgacgaagtacaccatccgcaccgtcccggacctgatcgccaagagcagggcctgg
gaggactatttcgacgccgccaagccgctgaaggcggcgatcaaacggctggggtga
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