Cicer arietinum (chickpea): 101511529
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Entry
101511529 CDS
T02819
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
cam
Cicer arietinum (chickpea)
Pathway
cam03018
RNA degradation
cam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101511529
09123 Folding, sorting and degradation
03018 RNA degradation
101511529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cam03019
]
101511529
03041 Spliceosome [BR:
cam03041
]
101511529
Messenger RNA biogenesis [BR:
cam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101511529
mRNA degradation factors
5'-3' decay
Lsm complex
101511529
Spliceosome [BR:
cam03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
101511529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
101511529
NCBI-ProteinID:
XP_004494370
UniProt:
A0A1S2XTM5
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Position
Ca3:36436065..36439847
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AA seq
150 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDSAGGRQPKGVGRGFDD
GSAKGPGGRGRGGQGGKPGGSRGAGGRGRG
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctatctcttcttaagactgcacaaggccaccctatgttggtggagctgaaa
aatggagagacttataatgggcatttggttaattgcgatacatggatgaacatccatctt
cgagaagtcatttgtacctctaaagatggagatagattttggcggatgccagaatgctat
atacgggggaatacaattaagtatcttcgagttcccgatgaggtaattgacaaagttcaa
gaagaaaccaagagccgtacagatcgcaagccacctggtgtgggacgtgggaggggaaga
ggtagggaggacagtgctggtggacgccaaccaaaaggagttgggcgtggttttgatgat
ggcagtgctaagggacctggaggccgaggcaggggtggacaaggtggaaagcctggtgga
agtagaggtgctggtgggagaggtagaggttga
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