Cyclobacterium amurskyense: CA2015_1090
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Entry
CA2015_1090 CDS
T03993
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
camu
Cyclobacterium amurskyense
Pathway
camu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
camu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CA2015_1090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
camu03400
]
CA2015_1090
Enzymes [BR:
camu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CA2015_1090
DNA repair and recombination proteins [BR:
camu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CA2015_1090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_OB_2
DUF6259
Flavodoxin_3
Motif
Other DBs
NCBI-ProteinID:
AKP50542
UniProt:
A0A0H4PQK2
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All DBs
Position
1345734..1348166
Genome browser
AA seq
810 aa
AA seq
DB search
MGLKAYRQKRSFEDTPEPKDVLEKSNQSRFVIQRHRASHLHYDLRLEMDGVLKSWAVPKG
PSMNPRDKRLAVQTEDHPIAYLSFEGVIPKGNYGAGKMTIWDEGNYKNLHPQNSLSSDYN
TGKLKIIFHGSKLKGLFTLVRSSSMNKKEQWLLIKHDDAFATDLDYDAEDFTDEAFSIKP
FQNPKKLDLRTLVKPMLASPGTKIFNDKDWVYELKYDGYRALANINNGKVELYTRNGISL
NEKFTPIHKELKNIAHRAILDGEIVVLDAEGMPQFNALQNYNEETTKGVLVYYVFDLLHL
NDHDTLELPLIDRKQLLKELIPEASHLHYCDHVETMGITIYNQAVEMGMEGVIAKKANSR
YDLNLRSPHWLKFKKIENTETILCGYTLSKKKSRKFASLILGMVEDGQLTYVGTCGSGFS
EEQLKELYYKFEVLKTEEPVFDIRKHLKGREAVWLIPKLICEVKFSEWTSSKVMRHPVFL
RLREDKNLDLEQPQLPSKNPTPQKKTPDEEFALKVDGITLHITHPEKSYWPESGYTKYDL
LDYYIQMSDIILPYLVDRPESLHRHPNGIHGESFYQKDNEHLPDWTDTHTIYSTSSDKDI
NYVLCQNKATLLYLNNLGCIELHPWHSTIYQLDHPDYAIIDLDPSDENTFEQIIETALVA
NDILKLASIEGFCKTSGASGLHIYLPMGGKYTYEEARDFTKLLCYYIQEKLPKLTTLERS
LKKRGPKIYLDYLQNRKGQTIVAPYSLRPQLHATVSMPLLWSEVKTGLKITDYTIKTVPN
IMAERKDSFKAVLGKAIDMGKAIEHLNNLS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgggactcaaagcgtaccgacaaaagcgaagttttgaagacacacctgaacctaaagat
gtgcttgaaaaaagcaaccaatccaggtttgtcatccaaagacatcgtgccagtcattta
cattacgacctgcgtttagaaatggatggagttctcaaaagctgggcagtccctaaagga
ccttccatgaatccccgagacaagcgtctggcagtacaaaccgaagaccaccccattgct
tacttaagctttgaaggggtcattccaaaaggcaattatggcgcaggaaaaatgaccatt
tgggatgaggggaactacaaaaatttacacccacaaaattccctgtcttcagactataac
actgggaagctaaaaatcatctttcacggcagcaaactcaagggactttttaccttggtc
cgttcttcctccatgaataaaaaagaacaatggttactcataaaacatgatgatgcattt
gccactgacctggattacgatgccgaagactttaccgatgaggcattttctataaagcca
ttccaaaacccaaaaaaattagaccttaggacccttgtaaaacccatgctcgcctctccg
gggacgaaaatctttaacgataaggactgggtatacgagttaaaatatgatggctaccgg
gcattggctaacatcaataatggaaaggtggagctctatacacgcaatggaatttctctc
aatgaaaaattcactcctatccataaggaactaaaaaacatagcgcatagggcaattcta
gacggtgaaatagttgtgttggacgctgaaggaatgccacaatttaatgcattgcaaaat
tataatgaagagaccaccaaaggagtattggtatattatgtatttgatttgttgcatctc
aacgatcacgacacattggaacttccattgatagaccgcaagcaattgctaaaagaatta
attccagaagcgtcgcatcttcactattgcgaccacgttgaaaccatgggaataacaatc
tataaccaagccgtagaaatgggaatggaaggtgtcatcgccaaaaaagccaattctcgt
tacgacctaaaccttcgctctcctcactggctaaagttcaaaaaaattgaaaacacagaa
acgatcctctgtggctatacgctttccaagaaaaaatcccgtaagtttgcgtccttaatt
ttagggatggtggaagatggccaattgacctatgtgggtacttgtggttccggtttttca
gaagaacagcttaaagagttgtattacaagtttgaagtacttaaaaccgaggagccagtg
ttcgatattcgcaaacacctcaaaggccgtgaagcggtatggttgattcctaaactgatt
tgtgaagtgaagttttcggaatggacttcatctaaggtaatgcgccacccagttttttta
aggttgcgtgaggataaaaatttggacttagaacagcctcaattaccatctaaaaatcca
actcctcaaaaaaagacacctgatgaagaatttgctttaaaagtggatggaatcaccctc
cacatcacacatcctgaaaagagctattggccagaatccggttataccaaatacgatttg
ttagattattatattcagatgtctgacatcatcctaccctacctcgtagaccgtcctgaa
agcttgcatcgacatcccaatggcatccatggcgaatccttttaccagaaagacaatgag
catttgcctgactggacagatacccataccatttattcaacatcttctgacaaagacatc
aattacgtattatgtcaaaacaaggccaccttgctgtatttaaataacctaggatgcatc
gaacttcatccctggcattccaccatttatcaattggatcatcctgattatgctatcatc
gatttagacccctcagacgagaacacattcgaacagataattgaaacggcattggtagcg
aatgacattttaaagttggcaagtattgagggcttttgcaaaacctctggcgcatcagga
ttacatatttatcttcccatgggaggaaaatacacctatgaagaagcacgagatttcacc
aaattactttgctattatatccaggaaaaacttccaaaactgaccactttggaacgctcg
ctcaaaaagagggggccgaaaatatatttggattacctacagaaccgaaaaggccaaacc
atcgttgcgccttacagtttaaggcctcagcttcatgctacagtatcaatgccattgctc
tggtcagaagttaaaaccggattaaaaattaccgactacaccataaaaacagttccaaac
atcatggctgaaaggaaagatagtttcaaagctgtcttaggcaaagccattgatatgggc
aaagccatcgaacacctaaacaatttaagttga
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