Capsicum annuum (peppers): 107859353
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Entry
107859353 CDS
T04646
Name
(RefSeq) homeobox-DDT domain protein RLT1 isoform X2
Organism
cann
Capsicum annuum (peppers)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WSD
DDT
Homeodomain
HARE-HTH
WHIM1
Homeobox_KN
DOG1
Motif
Other DBs
NCBI-GeneID:
107859353
NCBI-ProteinID:
XP_016559820
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All DBs
Position
2:127910110..127923383
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AA seq
1676 aa
AA seq
DB search
MDGGSEGEGNKNVNMSSSEGPKKPKRQMKTPFQLETLERVYAMETYPSEAIRAELSEKLG
LTDRQLQMWFCHRRLKDKNTSGGTEKKPRAGVTGVKRNAMESPREDLMVAEAASDRGSGS
VSRSGSGSGSGSSRFDNGDDMPTKPIRHYESPRRAMERRVIACIETQLRETLREDGPIIG
VEFDELPPGAFGSPIDFGERGDRYRHSYDSKLYGPYDAKVSVGTTLSLSPVLTSGHREPA
EPKIVSDKYGQIAAPYLYDSPVDGPSKNAPIMQGNGHFAREYGVEGQNIGVMSQQGRQGH
FPSPQQDNKFVSSNEDFLQLDRKRKSEDTRIGRDVQVNEKRIRKELEKQDLLRRKREEQM
KKDMEKQDRERRKEELRLMREQQRKEERYQREEKRELERRERFMQKELLRAERKKQKEEL
RKEREAAKQKAAMEKAMARRIAKESMELIEDERLELMDLAASSKGLPSIASLNYDALQNL
DSFRESLCEFPPKSVQLKKPFSIQPWIASDDNVGNLLMAWRFCLNFADILGLWPFTLDEF
LQAFHDYDSRLLAEIHIALLKLIIKDIEDVARTPSGGPGTNQYNAINPEGGHPQIVEGAY
LWGFDIRNWQKHLNPLTWSEVLRQFALSAGFGPPLKKKSERTCLNDSDETKGCEDIVSTL
RSGSAAENAVAIMQEKGYMSQRKSRHRLTPGTVKFAAYHVLALEGDKGLNVLDIAERIQK
SGLRDLSTSKTPEASISVALSRDPILFERIAPSTYNVRLAFRKDPADADAIISAAKEKIL
RYANGFLSGQNVEDEERDDDSEGDAAEGPEVDDLGTPYGVNKNSEQLLDTCLVNGKSKLS
DEVARQIGVDVVGIEGSNPSQECSEIDESKAGEPWVQGLTEGEYSDLCVEERLSALVSLI
GIANEGNSIRAILEDRLDAANALKKQMWAESQLDKRRLKEETVNRFNDSSFNAVVEGSQS
PLGFTNNKNQGTSPTTLVKDESAVIVGNVQNHFESILAEKSSAAQETFVGQFAVPSGNTA
ERSRMQLKSFIGHKAEEMYVYRSLPLGQDRRRNRYWLFVASGSSQDPGSGRIFFESPQGC
WRLIDTEEAFDRLLASLDTRGIRESHLHIMLQKIEGPFKERVWRNMSYGDNVGQHGSKYR
NKSSAVSSSPACGASAYSPKSTIYGVSSDSWETSLSFKIEFGKNEEEKRNALMRYQGFQI
WMWKECLRSSIVRALRYGKKRSLSLLGLCGHCLESYLSEEGICPSCNKMSSKVDMNAEFL
EQAMDSMDNMKFDCNSLMVSNAFPLRVRLMKAVLSFLEVYVPYEALQSSWTEDCRKTWGM
KLQYSSSPEDLLQILIQLEGAIKRDYLSADYETAEELMGLCASSRNAACASTYESVPQLP
WIPHTTAAVALRLLELDASISYDPQQKTEVELKNKVDCLPKPSLGYSSLKGLQKVEPTEI
DHDGPLREENWDYLSNLPSSSRSRQVVRGRGGGRPRKLQKGTASKLSESGRAVVRPTETL
TQVLIKQGETHGQRHVRGRRTVRKRRIDNKIVEETQPDYLGDRSSRLSLVVSPRKLVREE
FDMNVEGIEATNDNSMSMEAAESDDSAPENTYEFNRSDLMEMSDEDQVVYAGDGIEDDEE
EEEDNDDPDNDNDDRYRSHGQNLERYVNMDDDDSDRDGDVNEDQELDSSESEDYSD
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atggatggtgggtcggaaggagaaggcaacaagaacgttaatatgagttcatctgaagga
cccaagaagccaaaaaggcagatgaagactccctttcaattggaaaccctagaaagagtt
tatgctatggaaacgtatccatctgaggccattcgtgctgagctgtcagaaaaattaggt
ctaacggaccggcaattgcagatgtggttttgtcacaggaggttaaaggacaaaaacacg
tcaggggggacagaaaagaagccacgtgctggtgtgacaggtgttaagagaaatgctatg
gagtcacctagagaggatttaatggttgctgaagctgctagtgatcgtggctcaggatca
gtttcgaggtcagggtcagggtcaggatcagggtcaagtcggtttgataatggggatgat
atgccaacaaagcctataagacattatgaatcacctaggagggcaatggagcgccgagta
atagcttgtatagagacacaattaagagaaactttacgtgaggatggtcctattattggg
gtggagtttgatgagctaccacctggtgcatttgggtctcctattgattttggagaacgc
ggggaccgctacaggcactcctatgacagcaaattatatggaccatatgatgctaaagtt
agtgttggaacaactctctctctttctccggttctgacaagtggtcatcgtgaacctgct
gagccgaagattgtatctgataaatatggacaaattgcagccccttacctttatgattcg
cctgttgacggcccttctaaaaatgcgccaataatgcaagggaatggacattttgctagg
gaatatggtgttgaaggtcaaaacattggtgtaatgtctcaacagggcaggcagggacac
tttccatcccctcagcaggataacaaattcgtctctagtaatgaggacttcttgcaatta
gatcggaagcgcaagagtgaagacaccagaataggaagggatgttcaagtaaatgaaaaa
cggatccggaaagaacttgaaaaacaagatcttctacggcggaaaagggaagaacaaatg
aaaaaggacatggagaagcaggatcgtgaaagaagaaaggaagaactaaggctgatgcgt
gaacagcagaggaaggaggaacgatatcagcgagaggaaaagcgtgaactcgagaggaga
gagaggtttatgcagaaggagcttttgagggcggagaggaagaaacaaaaagaagagcta
agaaaagagagggaagctgcaaaacagaaggctgctatggagaaggcaatggcacgcaga
attgctaaagaatcgatggagctgattgaggatgaacgcttggaacttatggatctggct
gcctctagcaaagggttaccatcaattgcatctcttaattatgacgctttgcagaacctc
gactcatttagagaatctttatgtgaatttcctcccaagtctgtccaattgaaaaagcca
ttctccatccaaccatggattgcttcagatgacaatgttgggaatcttcttatggcttgg
agattctgtctaaattttgcagatattctggggctttggcctttcactcttgatgaattt
cttcaagctttccatgattatgattccagattattggctgagatacatattgctcttctg
aaattgattataaaagatattgaagatgttgctcgaactccttctggtgggcctgggaca
aatcagtataatgctatcaatcctgaaggtggacatcctcaaatagtcgaaggggcatat
ctttggggttttgacatacgcaattggcagaagcacttaaatcctttgacgtggtctgaa
gtactgcgccaatttgcgctctctgctggatttggacctccactgaagaaaaagagtgaa
cgcacttgtttgaatgattcggatgagactaaaggttgcgaagacattgtatccactctg
cgaagtggttcggcagctgaaaatgctgttgcaattatgcaagaaaaaggatatatgtcc
cagcgcaaatccaggcatcggttgacaccagggactgttaaatttgctgcttaccatgtt
cttgctcttgagggagacaagggcttgaatgttctagatattgcggaaaggattcaaaaa
tctggattacgtgatctttcaacaagcaagactccagaagcctctatatctgttgctttg
tcaagggatccaatactttttgaaagaattgctccttcaacgtacaatgtccgacttgct
ttcaggaaggatcctgctgatgctgatgcaataatttcagcagccaaggagaaaattcta
agatatgctaatggatttctctctggacaaaatgttgaagatgaagaaagagatgatgat
tctgaaggtgatgctgctgaaggtccagaagtcgatgacttgggtactccgtatggtgta
aacaagaatagcgagcaattgcttgacacctgcttggtgaatggaaaaagtaagctctct
gatgaggttgcacgacaaattggagttgatgttgtcggtattgagggaagtaaccctagc
caagaatgttcagaaattgatgaaagcaaagcaggtgagccatgggttcaaggactcact
gaaggtgaatactctgacctttgtgttgaggagcgtctaagtgctctcgtttccttgatt
ggcatagcaaatgaagggaattctatccgtgcaattcttgaggatcgtctggatgcagca
aatgctttgaaaaaacagatgtgggctgaatcccaattggataaaagacgattaaaggag
gaaacagtcaatagatttaatgatagttccttcaatgctgtggttgagggtagccaaagc
ccattggggtttacaaacaataaaaatcaagggacgtcaccaaccacgctggtcaaggat
gaatctgctgttattgtaggaaatgttcagaatcactttgagagtattcttgctgaaaag
agttcagccgcacaagaaacttttgtgggtcaatttgctgtaccaagtgggaatacagca
gaaaggtcacgcatgcagttaaagtctttcattggccacaaagcagaagagatgtatgtg
tacaggtccttgcctttaggtcaagaccgcaggcgtaatcgctactggctatttgttgcc
tctggttctagtcaagatcctggttctggcaggatattttttgaatcacctcaaggctgc
tggagacttattgacactgaagaggcatttgatcgtcttttggcttctttggatactcga
ggcatcagggaatcacatttgcatattatgttacaaaaaattgagggtcctttcaaggaa
cgtgtgtggagaaacatgtcttatggtgataacgttggtcaacatggaagcaaatataga
aataaatcttctgcagttagttcaagcccagcctgtggtgcaagtgcttacagccctaaa
agtaccatatatggcgtgagttcggatagctgggaaacatctttgtcttttaaaattgag
tttgggaagaatgaggaagagaaaaggaatgccttaatgagatatcaaggttttcagatc
tggatgtggaaagaatgtctcagatcatcaatcgtacgtgccttgcgatatgggaagaaa
aggtccttgtcgcttttgggcctttgtggccactgtttagagtcttatctttcagaagag
ggcatttgcccttcttgcaacaagatgagtagcaaagttgacatgaacgccgagttcctt
gagcaagcaatggactctatggacaatatgaaatttgattgcaatagtttgatggtttca
aatgcttttcctctaagagtcagattgatgaaggccgtattaagtttccttgaggtttat
gtgccatatgaggcacttcaatcatcttggacagaagactgtagaaagacatggggcatg
aagctgcaatattcatcgtctcctgaggatcttctccagattctgattcagttagagggc
gccatcaagcgtgattacttgtctgccgactatgagactgcagaagaattgatgggtcta
tgtgcttcatcaagaaatgctgcttgtgcatctacttatgaatctgtaccacaactcccg
tggatacctcataccaccgctgcagtggctctcagacttttggagcttgatgcctccata
tcctatgatcctcagcagaaaactgaggttgagttaaaaaataaagtagattgccttcca
aagccatctttggggtattcttctttgaaaggtctgcaaaaggtagaaccaacagaaatt
gatcatgatggaccattgagagaggaaaactgggattatctcagcaatttgcctagcagc
tcgagaagtaggcaagttgttcgtgggcgaggaggcggtcgtccgcgaaagctgcagaaa
ggaactgctagcaaactatcagaatctggcagggctgttgtaaggcctactgagacgtta
actcaagtacttattaagcagggagaaacgcatgggcagagacatgtacgaggtcgccga
actgtcagaaagaggagaatagataataaaattgttgaagaaacccaaccagattatttg
ggtgacagaagcagccggctaagtcttgtagtatcacctagaaagcttgtgagggaagag
tttgacatgaacgtggaaggaatagaagccacaaatgataatagtatgagtatggaagct
gctgaatctgatgatagtgctcccgaaaatacatatgagtttaacaggagtgatttaatg
gaaatgtcagatgaggatcaggttgtttatgccggtgatggcattgaagatgacgaggag
gaggaagaggacaacgatgaccctgataatgacaatgatgatagatacagaagccatggt
caaaatctggaaagatacgttaacatggatgacgacgactcagatagagatggggatgtc
aatgaggaccaagagttggattcttcagagtctgaagattatagtgattga
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integrated database retrieval system
