Capsicum annuum (peppers): 107863382
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Entry
107863382 CDS
T04646
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1 isoform X1
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107863382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107863382
03019 Messenger RNA biogenesis [BR:
cann03019
]
107863382
Transcription machinery [BR:
cann03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107863382
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107863382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
MMS1_N
Motif
Other DBs
NCBI-GeneID:
107863382
NCBI-ProteinID:
XP_016564761
LinkDB
All DBs
Position
3:186475785..186515535
Genome browser
AA seq
1442 aa
AA seq
DB search
MSFAACKTMHCPTGIENCAAGFITHSAADITPQIQTADIDSDWPATKPLGPIPNLIVSAG
NVLEVYMIRVERDAAEVKRGGLMAGISAASLELVCNYRLHGNIYSVGVLTAGGVDGGRRR
DSIILSFEDAKISILEFDDATHGLRTSSMHCFEGPDWFHLKRGRESFDKGPIIKVDPQGR
CAGVFAYEQQMIILKAAEVNSSLVGEDSAFSAGGASARIESSYIITLRDLDVRHVKDFTF
LHGYIEPVMVILHERELTWAGRVSWKHHTCMVSAFSISTTLKQHPLIWSAVNLPHDAYKL
LAVPSPIGGVLAIGANTIHYHSQSSSCSLALNNFAFIGDSSQDMPRSSFNVELDAANANW
LTNDVAMLSTKTGELLLLTIIYDGRIVQKLDLSKSKASVLTSGITTIGDSLFFLGSRLGD
SLLVQFTCGLGESNLPPGMQEEVGDIENDAPSAKRLRISSSDALQDMINGEELSLYGTAP
NNAQSAQKTFSFAVRDSLINVGPLKDFSYGMRINADLTAAGIAKQSNYELVCCSGHGKNG
SLCVLQQSIRPEMITQEALPGCKGIWTVYHKNTRTHLNESSRVADEEDEYHAYLIISLET
RTMVLQTASNLEEVTENVDYYVQGTTLAAGNLFGRRRVIQVFAHGARILDGAFMTQELSF
KASIVESGLSSDSSTVASVSIADPYVLLRMTNGSLQLLVGDPSSCSVSITVPSIFESSQK
SISACTLYHDKGPEPWLRKTSTDAWLSSGMGEAIDGADGVTQDQGDVYCVVCYENDILEI
FDVPNFSCVFSVDKFVSGRTYLVDTYIQDSVNGLHTHSKNTENVIGPGQKENSKDMKINL
VELMMHRWIGKHSRPFLFGILADGTVLSYHAYVFEGSENSSRVEGSVSSQNSVSLSSTNV
SRLRNLRFVRVPVDNYAREEMPSGTPLERMNVYKNIGGSQGIFLTGSRPSWFMVFRERLR
IHPQLCDGPIVAFTVLHNVNCNHGLIYVTAQGTLKICQLPSFLSFDNYWPVQKIPLKGTP
HQVTYSAEKSLYSVIVSVPVLKPLNQVLSTIADQEVGHQFDPENINYEGSYPIEEFEVRI
LEPEKSGGPWQTRASIPMQNSENALTVRTVTLLNTTTRESETLLAVGTAYVQGEDVAARG
RVLLFSIDRTADNSRTLVSEVYSKEIKGAISALASLQGHLLVASGPKITLHKWTGSELNG
VAFCDLPPLHVVSLNIVKNFILLGDIHKSIYFISWKEPQLTLLAKDFGALDCLATEFLID
GSTLSLVVSDDQKNVQIFYYAPKVSESWKGQKLLSRAEFHVGSRITKFLRLQLLPTTSER
TATAPGSDKTNRFASVFGTLDGSLGCIAPLDELTFRRLQSLQKKLVSAVSHVAGLNPRSF
RQFHSNGKAHRPGPDNIVDCELLSHYEMLPLEEQLEIAQQIGTTRMQIMSNFNDLILGTS
FL
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcgctgcgtgtaagacaatgcattgccctaccggcatcgagaattgcgcggcc
ggcttcatcactcactcagccgccgatatcaccccgcaaattcaaacagctgacatcgac
tccgattggccagccactaagccacttggtcccatccccaaccttattgtctctgctgga
aacgtccttgaagtttacatgattagggttgaacgagatgctgccgaagtgaaacgtggt
ggcctcatggctggtatttctgctgcttcacttgagctcgtttgcaattacaggttacat
ggaaatatatattcagtgggcgtgttaacagcaggaggagttgatggtgggagaaggaga
gattcaattattttatcttttgaagatgctaaaatatccattcttgagtttgatgatgcc
acacatgggcttcggacgagctcaatgcactgttttgaaggtccagactggttccattta
aaaagaggacgagagtcatttgacaaaggtccgattatcaaagttgatccacaggggaga
tgtgctggtgtatttgcttatgaacaacagatgataatactcaaggctgctgaggtcaac
tctagcttagttggtgaggacagtgcttttagtgctggaggggcctcagctcgcattgaa
tcatcatatatcatcaccttgcgagatcttgatgtgaggcatgtcaaagatttcacattt
cttcatggttatattgagcctgtcatggttatccttcatgaacgggaactcacttgggct
gggcgcgtctcttggaaacaccatacttgtatggtctctgcctttagtattagtacaacg
ttgaagcaacatcccctgatatggtcagccgttaatctccctcatgatgcatataaactt
cttgctgtgccatctcctattggtggagtacttgcaattggtgcaaacactatccattat
catagccagtcatcttcttgttcgttggcattgaacaattttgccttcattggtgatagc
agtcaagacatgccaagatcatcttttaatgtggagttagatgcagctaatgcaaattgg
ttaacaaatgatgtggcaatgctgtcgacaaaaacaggggaactacttcttctaacgatt
atatatgatgggagaatcgtacaaaagctcgacctttcaaaatcaaaagcttcagtactt
acatcgggaattacaacaattggagactcattattctttttgggcagtcgccttggagat
agtttgctcgtgcaatttacttgtggtcttggagagtcaaatttgcctcctgggatgcag
gaagaggttggagatattgaaaatgatgctccttctgcaaagaggctaagaatatcatcc
tcggatgcattgcaagacatgattaatggcgaagagctttctttgtatggtacagctcca
aataatgcacaatcagcacagaagacattctcatttgcagtgagggattcgctgatcaat
gttggccctctaaaagatttctcttatggtatgagaattaatgctgacctgactgctgct
ggaatcgctaagcaaagtaattatgaactggtgtgctgttcagggcatggaaagaatggt
tctctgtgtgtgcttcaacaatcaatccgcccagaaatgatcacccaagaagctttacca
ggttgcaagggaatttggactgtctaccacaagaatacgcgtactcacctcaacgagtcc
tcaagagtagcagatgaagaagatgaatatcatgcatatttgattattagtttggagact
cgtacgatggttctgcagactgcaagtaatttggaggaggtgacagagaatgtcgattac
tatgtccaaggaactactcttgctgctggaaatctatttgggagacgccgagttatccaa
gtgtttgctcatggtgctcgaattcttgatggtgcatttatgactcaagaattgagtttt
aaggcttcaattgtggaatctggcttgagttcagatagttctactgtagcttctgtttca
atagctgatccttacgttctactaagaatgacaaatggaagtcttcagctacttgttgga
gatccgtcatcatgctctgtttctattactgttccatcaatatttgaaagctcacaaaag
tcgatatctgcttgtacactatatcatgataaaggccctgaaccttggctcaggaagact
agtactgatgcttggctttcttctggtatgggggaggcaatcgatggtgccgatggggta
acccaggatcagggtgatgtatattgcgttgtttgttatgaaaatgacattcttgaaata
tttgatgttcccaattttagttgtgttttctccgttgataaatttgtttctgggaggacc
taccttgttgacacctacatccaagattcagtcaatggtcttcatacacattcgaagaat
actgagaatgtaatcggacctggacagaaagagaacagtaaggacatgaagataaacttg
gtggagttgatgatgcatagatggatagggaaacattcccgtcctttcctttttgggata
ttggctgatgggacggttctaagttaccatgcatatgtttttgaaggttcagagaattct
tctagagttgagggatctgtttcatcacagaattcggttagtcttagcagtacaaatgta
tctaggctcagaaatttaagatttgttcgggttccagtagataattatgcgagggaagag
atgccgtctggaaccccattagagcgaatgaatgtttataagaatatcggtggttctcaa
ggaatatttctcaccgggtcaaggccatcttggttcatggtgttccgtgaacgacttaga
atacatccacagctgtgtgacggacctattgttgccttcactgttcttcacaatgttaac
tgtaatcacggacttatatatgtaactgcccagggaactttaaagatttgccaacttcca
tctttcctatcctttgacaactactggccagtgcaaaagataccattgaagggaacacca
catcaagttacttattctgctgagaagagtctttactcggttatagtttcagttccagtt
cttaagccattgaatcaagtcctatcaactatagctgatcaagaagttggccatcagttt
gatcctgaaaatataaattatgaaggaagctaccctatagaagaatttgaggtgcgaatt
ttggaaccagaaaaatctggtgggccctggcaaacgagggcaagtattcccatgcaaaat
tctgaaaatgctctgactgtgaggacggttactttacttaatacaacaactagagagagt
gaaacacttttggcagttgggactgcttacgtgcaaggggaagatgttgctgcaaggggt
cgtgtgcttttgttttctatagatcgaactgctgataattctcgaactttggtctcagaa
gtctactcaaaggaaataaagggtgctatatctgctttagcttcacttcaaggtcacttg
ttagtagcttctggtcctaaaattaccttgcacaaatggacgggttctgaattgaatgga
gttgccttttgtgatcttcctccacttcatgttgtgagcctaaatattgtgaagaacttt
attcttcttggagacattcataagagtatatacttcatcagttggaaagagcctcaactt
actttattggctaaagattttggtgctcttgattgtttagcaacagagtttttgattgat
ggtagcactctcagtcttgtagtttcagatgatcaaaagaatgttcagatattctactat
gctccaaaggtgtcagaaagttggaaagggcagaaacttctgtccagggctgagttccat
gttggttctcgcattacaaagttcttacgcttgcagttgcttcccactacatctgagcga
actgctactgctccggggtctgataaaacaaatcgctttgcttcagtgtttggcacgcta
gatggcagcctcggctgtatagcccctcttgatgaacttacttttcgtaggcttcagtcc
ctgcaaaaaaagcttgtcagtgctgtttcccatgttgctggactaaatcctagatctttc
cgccagttccattcaaatggaaaagctcatcggcctggtccagacaacatagttgactgt
gagctgctatcccactatgagatgctcccattggaggaacagcttgagatagctcagcag
atcggaaccacacggatgcaaataatgtcaaactttaatgacttgatcttgggtacaagc
ttcttataa
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integrated database retrieval system
