Crassostrea angulata (Portugese oyster): 128179318
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Entry
128179318 CDS
T09348
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6-like isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
canu
Crassostrea angulata (Portugese oyster)
Pathway
canu03015
mRNA surveillance pathway
canu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128179318
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
128179318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128179318
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
128179318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
128179318
NCBI-ProteinID:
XP_052702683
EnsemblRapid:
LOC128179318
LinkDB
All DBs
Position
1:42223838..42238915
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AA seq
552 aa
AA seq
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MAGDGVDIDLYDNLEEGFDQENEFNADDDLYNDVITAPSSGDNAEVKQEPDTPTKTTPSV
TVPSGYTGRRISLYVGNLTWWTTDQDLIDSLAAIGVTDLVEIKFYENRANGQSKGFAVVV
VGSDNSSRLIFEKLPKKEIHGQVPQISNCNRQALSQFEAQARKGEPPAQNGNTNKGHQRS
HSPSRTQQKQPFVNRQQQRPSGPTVSGPPPTGPPPTGAPIMPGMPPVSGPPPQVQFPPGF
PPRTLGPPPAVMMRGPPPPIRGPPPADPRGPPPRPEWDRPPGPDVFTQPPPPGTPYPPLG
PPPGPQPVPPPGARPPGPGMPHQQPPISIPPPGHPPAPAPHVNPAFFPPQHGGPPPTMPH
AAPGHHDPYRAPPPVSYPSDHYARPPTERPEPQSPALSEQEFEEIFQRNKTVSSSAISRA
VQDASAGEFASAIETLVTAISLIKQSKIASDDRCKILISSLQDTLHGIEEKSYGSKSSSR
RSRSRERDRERKERSRSHRSRSRDREREYRERSRERDRHYEAESSSSSSRSHRDRDRERD
RDREREYSSRRH
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgatggcgtggatattgatttgtacgacaatttagaagaaggctttgatcag
gaaaacgagttcaatgcagatgatgatctttacaatgacgtgatcacagctccctctagt
ggtgataatgcagaggtaaaacaagagccagatacaccgaccaagacgacaccatcagta
actgtcccctctggatacacagggcggagaatcagcctctatgtgggcaatctcacctgg
tggacaacagaccaggatttaattgattctttggcagccataggtgtaacagatttggtg
gaaatcaagttctatgaaaatagagcaaatggacagtctaaagggtttgctgttgttgtt
gttggttcagacaattcatctcggttgatttttgagaagttaccaaagaaggagatacat
ggacaggtgccacaaatctctaactgtaacagacaggccttgagtcagtttgaggcccag
gcccggaaaggagagcctccagcacagaatggaaatacgaacaaaggtcaccaaagaagt
cacagtccttcaaggacccaacagaagcagccatttgtgaatcgccagcaacagaggccc
tctggcccgaccgtgtcagggcccccacccacaggcccacccccgacaggtgccccaatc
atgccaggtatgccaccggtgtctggtcctcccccacaggtgcagttcccaccaggattt
cccccaagaactctgggccctcctccagctgttatgatgagaggtccaccaccaccaata
aggggaccacccccagcggaccccaggggtcccccacccagacccgaatgggacagaccc
ccaggaccagatgtctttactcaacctccacctccaggcacaccttaccctccacttggc
cctccaccaggacctcagccggtcccacctccgggagcccgacccccaggacctggaatg
cctcaccagcagcccccgatttctatcccccctcctggacatcccccagccccggcccct
catgtcaacccagccttcttcccacctcaacatggtggaccacctccaactatgccgcat
gcagcgcctggacatcacgacccatacagagctccaccccctgtgtcatatccaagtgat
cattatgccagacctccaacagaaagacctgagccacagtccccagcactcagtgaacaa
gagtttgaagagatatttcagagaaacaaaacggtatctagcagtgctatttcaagagca
gttcaagatgctagtgcaggtgaatttgccagtgcaatagagactttggtgacggccatc
tctctcatcaagcagtctaagattgccagtgatgatcgctgtaagatcctgatcagctcc
ttgcaggatacacttcatggaattgaggaaaagtcttatggatccaagagcagcagcaga
aggtcgaggtccagagagagggacagagagcgcaaggaaagaagtcgcagtcacagatca
cgaagtcgcgacagggaaagagagtaccgagagagaagtcgagaacgagatcgccattat
gaggccgagtccagttcctcttcatctcggtctcaccgagatagagacagagaaagagac
agggacagggaacgtgaatacagcagccgacgacattaa
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