Candidatus Paracaedimonas acanthamoebae: IM40_06525
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Entry
IM40_06525 CDS
T03240
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
caq
Candidatus Paracaedimonas acanthamoebae
Brite
KEGG Orthology (KO) [BR:
caq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caq03032
]
IM40_06525
03400 DNA repair and recombination proteins [BR:
caq03400
]
IM40_06525
Enzymes [BR:
caq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
IM40_06525
DNA replication proteins [BR:
caq03032
]
Prokaryotic type
DNA Topoisomerases
IM40_06525
DNA repair and recombination proteins [BR:
caq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
IM40_06525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
zf-C4_Topoisom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AIL13227
LinkDB
All DBs
Position
complement(1247479..1249884)
Genome browser
AA seq
801 aa
AA seq
DB search
MKVVVVESPSKAKTINKYLGSDYKVLASYGHIRDLPSRNGSVDPEKNFNMVWEIDDKAER
HINEILKSLKGADQLLLATDPDREGEAISWHVKEVLDQKKALINVDVKRVVFYEVTKKAI
LEAVKQPRPLNQELIEAYLARRALDYLVGFTLSPILWRKLPGSRSAGRVQSVALRLTTER
EDEIEAFRSQEYWTISAEFLGQPQKQLRARLTYLEGKKLDKFDLSNQSKAQEAQAEIEKH
LYKVLEVEKKQAKRHPSPPFTTSTLQQEASRKLGFSAKKTMQLAQHLYEGFEVGGETVGL
ITYMRTDSVNLAQEALFATRDLIKQQYGSSYCPEAPRTYKSKAKNAQEAHEAIRPTDLTR
APHMLKSVLDADHFKLYELIWKRTIASQMESALLDQVGVDIANSSKEIILRATGSTIAFD
GYLKVYEEGKDDEASEQEQILPPLLQGEDLKLQAVHPEQHFTQPPPRYTEASLVKKLEEL
GIGRPSTYASIISTLIDRKYVALDKKRLKPEPLGRLVTAFLKNYFAKYIEYDFTAHLEEE
LDEISTGKLSWFKVLENFWKQFYATVEQASPLKIADVITQLEKDLEKLIFITMDGTEDPR
QCPQCKEGKLNLKLGKWGAFVGCSNYPTCGFTRKLSGALKEEEAQSQETAEKEAPKNVFE
PKILGKDPTSNATVSLRKGPYGFYLQWDGEAQPIQVPAKGKGKKAEVAKPKRVAIPKGRA
VESITLEDALALGALPRTVGTHPETGKPITAAIGRFGPYVKHESTFKSIGKDDDVLTVTL
ERALELFNQEPEKKKTFKKKS
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttgtagttgttgaatcgccatcaaaggcaaaaacgatcaataaatatttaggt
tctgattataaggttttagccagctatgggcatattcgtgatttaccttcccgcaatggt
tctgtagatcctgagaagaattttaacatggtgtgggagatcgatgacaaggctgaacgt
catatcaatgagatcttaaaatcgcttaaaggagccgaccaacttttgctagcgaccgac
cctgatcgtgaaggagaagctatttcatggcatgttaaagaagtccttgatcaaaaaaaa
gctttgataaatgttgatgtcaagcgtgtcgttttttatgaggtaaccaaaaaagcaatt
cttgaagccgttaagcagccacggcctcttaatcaagagttaattgaagcatatttagcg
cgtcgcgctttagactatcttgttgggtttacgctttcgcctattttatggcgaaagtta
ccgggcagccgctccgctggtcgagttcaatcggtggcattacggctgacaacagaacgt
gaagatgagattgaagcttttcgttctcaagaatattggacaattagcgctgagttctta
ggccagccccaaaaacaattacgtgcaagattgacttatcttgagggaaagaagcttgat
aagtttgatctttctaatcaatctaaagctcaagaagcccaagctgaaattgaaaagcac
ctttataaagttttagaggtcgagaaaaaacaagcgaaaagacatccatcaccgccattt
accacatcaactcttcaacaagaagcttcccgtaaattaggctttagtgcaaagaaaaca
atgcaattggctcaacacctgtacgaagggtttgaagtgggaggagagacagttggtctt
attacgtatatgcgtacagatagcgttaaccttgcgcaagaagcgctttttgcaacgcga
gaccttattaaacaacaatatggctcttcatattgtcctgaagctccaagaacctataaa
agcaaggccaaaaatgctcaagaggcccatgaagcgatccggcccaccgatcttacgcgc
gcgcctcatatgcttaaatctgtattagatgcagaccatttcaaactttatgaacttatc
tggaaaaggacaatcgcttctcaaatggagtctgctcttcttgatcaagttggtgtggat
attgcaaactctagcaaagaaatcattcttcgcgccacaggctcaacgattgcttttgat
ggctatcttaaagtctatgaagaaggaaaggatgacgaggcgtctgaacaagagcaaatc
cttcctccgttgttgcaaggtgaagacctaaagttgcaagctgttcaccctgaacaacat
tttacgcaacctccaccgcgatatacagaggcaagcctcgtcaaaaagcttgaagaactt
ggcatcgggcgaccctcaacatatgcatccatcatttcaacgttgattgaccgtaagtat
gttgctctcgacaagaaaagacttaagcctgagcctttagggcgtttggtaacagccttt
ttgaagaattatttcgcgaaatatatcgaatatgattttaccgctcaccttgaggaagag
ttggatgaaatttcgacagggaagctttcttggtttaaggtgcttgagaatttttggaag
cagttttatgcgactgttgaacaggcctctccattaaaaatagctgatgtgattacgcag
ttagaaaaagaccttgagaagttaatttttatcaccatggatggtactgaggatcctcgg
caatgtccgcaatgtaaagagggaaaactcaatcttaaattagggaaatggggcgccttt
gtcggctgttcaaattacccaacttgcggttttacccgtaagctttcaggtgcgcttaaa
gaggaagaagcgcagtctcaggagactgcagaaaaggaagcgccaaagaatgtttttgaa
ccgaaaatattaggaaaagacccaacatcaaatgctactgtttctttgagaaaaggacct
tatggcttttatcttcaatgggacggagaagcgcaacccattcaagttccggctaaaggc
aaagggaaaaaagcagaagttgcaaaaccaaagcgtgttgcgattccaaaaggaagagct
gttgaaagtatcacgcttgaggatgctttagcgttgggagctttgccacgcacggtgggg
acgcatcccgaaacaggaaagccaattacggcggctattgggcgttttgggccttatgtc
aaacacgagagtacttttaaatcaatcgggaaggatgatgatgttttaacggtgacgttg
gaacgagctttagaactctttaaccaagaacccgagaagaaaaaaacgtttaaaaagaaa
tcataa
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