Corynebacterium aquatimens: CAQUA_07130
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Entry
CAQUA_07130 CDS
T09232
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
caqm
Corynebacterium aquatimens
Pathway
caqm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caqm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAQUA_07130 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caqm03019
]
CAQUA_07130 (deaD)
03009 Ribosome biogenesis [BR:
caqm03009
]
CAQUA_07130 (deaD)
Enzymes [BR:
caqm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CAQUA_07130 (deaD)
Messenger RNA biogenesis [BR:
caqm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CAQUA_07130 (deaD)
Ribosome biogenesis [BR:
caqm03009
]
Prokaryotic type
rRNA helicases
CAQUA_07130 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
AAA_22
DUF4956
Motif
Other DBs
NCBI-ProteinID:
WJY66124
LinkDB
All DBs
Position
complement(1548299..1550746)
Genome browser
AA seq
815 aa
AA seq
DB search
MNNDENAQFDESVDVDNAQENVNAAEATDTPDETTEQILTVDDLVGSDLNDSLAEETADG
TDDSADSSTNATELPEIQVEPEGPIVDEAEAGKDSETPEIQVEPEGPLIDAEGYDTAETV
EGDDAAQTVEGDDAGDADDDTDDDDADESRDGDGEGFTGLSLPSNVLAAVERVGFENPSP
IQEQTIPLLMEGRDVVGLAQTGTGKTAAFALPILSRINKDERHPQALVLAPTRELALQVA
DSFQSFADHLGNISILPIYGGQAYGVQLSGLRRGAQIIVGTPGRVIDHLERGSLDISNLR
FLVLDEADEMLNMGFQEDVERILEDTPDEKQVALFSATMPNAIRRISKQYLDDPAEVTVK
SETRTNTNISQRYLFTPGRNKMDALTRVLEVAEFEAMIIFVRTKNDTEEVAQNLREQGFA
AAAINGDIPQQQRERTVDQLRDGRIDILVATDVAARGLDVERISHVLNYDIPRDTESYVH
RIGRTGRAGRSGKALLFVTPRERRMLRSIEKVTGARIEEVDLPTVDQVNDARKAKFADSI
TASLDAKQIDLFKELVQNYSEANGVAMEDIAAALAAQAQGEAEFLMKEQPKSKKDRRDRE
KWDREDRFDRDRGDRGGRGKRDRFDRDDRGDRGGRKFDRQQDSENFDTYRLDVGKRQHVR
PGGIVGALANEGGLTNKDFGRITIGGDFSLVELPKNLDPAVLDRLSDTRISGQLINIKRD
TGAPSRDRGGYRDRGYRDRDDDRRGGYRDRGYRDRDDRDNRGGRGGHGGFRGRDDDRRGG
YRDRDDDHRGGYRGGRDRDWDSRDRGRNKKKGWRD
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgaataatgatgagaacgcgcagttcgacgagagtgtggatgtcgacaacgcgcaggag
aatgtaaacgctgcagaagcgacagacacacccgatgagaccacggagcagattctcaca
gtggacgatctcgtcggatccgacttgaacgatagcttggcagaagagactgccgatggc
accgacgacagtgccgactcgagcactaacgccaccgaactccccgagatccaggtggag
cccgaaggccccatcgtggacgaagccgaagctggcaaagactccgagacgccggaaatc
caggtggagcccgagggcccgcttatcgacgccgagggctacgacactgccgagactgtc
gagggcgatgacgctgcccagactgtcgagggcgatgacgctggtgacgccgatgatgac
accgatgacgatgacgccgatgaatctcgggacggagacggcgagggctttactgggtta
agcctgccgtcgaatgtgcttgctgccgtggagcgtgtgggctttgaaaacccgtcgccg
atccaggaacagacgattccgctgctcatggaaggtcgggacgttgttggtctggcacag
accggtacgggtaaaaccgccgcgttcgcgttgccgattctgtcccgaatcaacaaggat
gagcgccacccgcaggccctggttctggcgccgacgcgcgaacttgcgctccaggtcgcg
gattccttccagtcctttgcggaccacttgggcaacatttcgatcctgccgatttacggt
ggtcaggcctatggcgtgcagctgtcggggctgcgtcgcggggcacaaatcatcgtcggt
acgccagggcgcgtgatcgaccaccttgagcgtggctcgctggacatctctaacctgcgc
ttcctcgtgctcgatgaggccgatgagatgctcaacatgggtttccaggaagacgtggag
cgcattctggaagacaccccggatgagaagcaggtggcgctgttctcggcaacgatgccg
aatgcgatccgccggatctctaagcagtacctcgatgatccggcagaggtcaccgtgaaa
tcggagacccgcaccaacaccaacatctcccagcgctacctgttcacgccgggccgcaac
aagatggatgctttgacccgcgtccttgaggtcgccgagttcgaggcaatgatcatcttc
gtgcgtacgaagaacgacaccgaggaagttgcgcagaacctgcgtgagcagggattcgct
gccgcagccatcaatggtgacattccgcagcagcagcgcgaacgcaccgtcgatcagctt
cgcgacggccgcattgacatcctcgtggccaccgacgttgccgcccgtggcttggatgtg
gagcgcatctcccacgttttgaactacgacatcccgcgcgataccgagtcctatgtgcac
cgcatcggacgcaccggtcgtgccggccgcagcggtaaggcgctgctgtttgtcaccccg
cgtgagcgccgcatgctgcgctcaattgaaaaagtcactggagcgcgcatcgaggaagtc
gacctgccgaccgtggaccaggttaacgacgcccgcaaggcgaagtttgcggattccatc
acggcctccctggacgcaaagcagatcgacctgtttaaagaactagtgcagaactactct
gaggccaacggcgtggccatggaggacatcgcagccgcccttgccgcccaggcccagggt
gaggccgagttcttaatgaaggagcagccgaagtccaagaaggacaggcgcgatcgcgaa
aagtgggaccgtgaggatcgctttgaccgtgaccgtggtgatcgcggcggccgcggcaag
cgcgaccgcttcgaccgcgatgacagaggcgaccgtggcggccgcaagttcgaccgccag
caagacagtgagaactttgacacctaccgccttgacgtgggtaagcgccagcacgtccgc
cccggcggcatcgtcggtgcgctcgcaaacgaaggtgggctgactaacaaagacttcggc
cgaatcaccatcggcggcgacttctccctggtggaactaccgaagaacctcgacccggct
gtgcttgatcgcctcagcgatacccgcatttccggccagctaatcaacatcaagcgcgac
accggcgccccgtcccgcgaccgtggaggctaccgcgatcgtggttaccgtgaccgcgat
gacgaccgccgtggaggctaccgcgatcgtggctaccgcgaccgcgatgatcgcgacaac
cgcggcggcagaggtggccacggtggattccgcgggcgtgacgacgaccgccggggcggc
taccgcgaccgcgacgatgaccatcgcggcggctaccgcggtggccgggaccgtgactgg
gattcccgcgatcgcgggcgcaacaagaagaagggctggcgtgattag
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