Cryobacterium arcticum: PA27867_1555
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Entry
PA27867_1555 CDS
T04435
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cart
Cryobacterium arcticum
Pathway
cart03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cart00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PA27867_1555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cart03400
]
PA27867_1555
Enzymes [BR:
cart01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PA27867_1555
DNA repair and recombination proteins [BR:
cart03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PA27867_1555
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANP72512
UniProt:
A0A1B1BIU3
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All DBs
Position
1:complement(1757087..1759726)
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AA seq
879 aa
AA seq
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MAHGAEVAGHNPADTAGAHREVVTVGGRRVTLTNLEKVMYPATGTTKADVLGYYADVADA
LIRHTRDRPATRKRWVHGVGTAAEPGQVFFQKNLGDGTPEWVERRELEHKERSTVYPLVN
DLATLTWLAQIGTLEIHVPQWRFDARGAQSPPDRLVLDLDPGDGVGLAECAEVARWARAL
LLDMGLDARPVTSGSKGIHLYAALDGRHSSEQVSQVARELARALEADHPDEVLSAMTRSM
RPGKVFVDWSQNSAAKTTIAPYSLRGLLRPFVAAPRTWRELEAPGLEQLDYHQVLKRLSR
APDPLAAVADAADAHAGAAAGPVPASGATAGPDEDRLHTYRSKRDARRTPEPMPKSTPDA
SPAAGGAAFVVQEHHARALHFDLRLEHEGVLASWALPKGVPTDPTHNHLAVQTEDHPLEY
LAFEGDIPAGEYGAGTMSIWDRGEYSAEKWRDDEIIVTLHGSPGGPLAAGGDESGRTFAL
IRTGGAGSRNWLIHLMKSRRPPAAETSGAGQGGSAQEARVTSAPLRAAAYSPMLARPGTL
RDLSAETDWAYEMKWDGIRMIATVGAGADGAVRFLTRNGNDVTAAFPELVDDLRAALAGR
AAVLDGEVVALDRHNRPDFSLLQTRLGLTDPTDVRRARQGAPVHYFVFDLLEHDWRPLVE
LPYAERRQALERWVQGTGTVQVPPAFDDQDAATVLATSSRLGLEGIIAKDTRSGYLAGRR
ADRWVKIKHVTSQEVVIGGWRPGAGHRSSTLGSLLVGIPAPAGPETAPGAPRRLLYAGRV
GTGFRDRDLTALRRRLDELSTADTPFEDVPAADAADAVWVQPALVGEVDFSAWTPAGRLR
HPSWRGLRADKDPADVVREEAVREEAALGAAVAEAGDSR
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggcacatggcgcggaggttgcgggacacaacccggcggacaccgccggggcgcaccgc
gaggtcgtgacggtgggcggccgccgggtcaccctcaccaatctcgagaaggtgatgtat
ccggccaccggcacgaccaaggccgatgtcctcggctattacgcggacgtggcggatgcg
ctcatccggcacacgcgggaccggccggccacgcgcaagcgctgggtgcacggtgtgggc
accgccgccgaacccggccaggtgttcttccagaagaatctgggcgacggcacacccgag
tgggtggagcgccgggagctggagcacaaggagcgcagcaccgtgtacccgctcgtgaac
gacctggccaccctcacctggctggcgcagatcggcaccctcgagatccatgttccgcag
tggcggttcgatgcccggggcgcgcagagccctccggaccggttggtgctcgacctcgac
cccggcgacggggtgggtctggcggaatgcgccgaggtggcgcgctgggctcgggcgctg
ctgctggacatgggcctggacgcccggcccgtgacgagcgggagcaagggcatccacctc
tatgcggcgttggacggccggcacagttcggagcaggtgagccaggtggccagggagctg
gcccgggcgctggaagccgaccatccggacgaggtgctcagcgcgatgacccggtcgatg
cgaccgggcaaggtcttcgtggactggagccagaacagcgcggccaagaccaccatcgcg
ccgtacagcctgcgcggcctgctgcggccgttcgtggcggctccgcgcacctggcgcgag
ctggaggcgccggggctggagcagttggactaccaccaggtgctcaaacggctctcccgg
gcgccggacccgctggcggccgtggccgacgccgccgacgcgcatgccggcgccgcggcg
ggcccggtgccggcttccggggccaccgctgggccggacgaggaccgcctgcacacctac
cggagcaagcgggacgcccggcgcacgcccgaacccatgccgaagagcacgcctgacgcc
tccccggccgccggcggagccgccttcgtggtccaggaacaccatgccagggccctgcac
ttcgacctgcgcctggagcacgagggcgtgttggcctcctgggcgctgcccaagggggtg
cccaccgaccccacccacaaccacctggccgtgcagaccgaggaccacccgctcgagtac
ctcgcgttcgagggtgacattccggccggggaatacggtgcagggacgatgtcgatctgg
gaccggggcgaatacagcgcggagaagtggcgggacgacgagatcatcgtgaccctgcac
ggcagtcccggcggcccgctcgcggcgggtggggacgagtcggggcgcaccttcgccctc
atccgcaccgggggcgccggctcccgcaattggttgatccacctcatgaagtcccggcgc
ccgccggccgcggagacatccggcgccggccagggcggctctgcccaggaggcccgcgtc
accagcgccccacttcgcgcagcggcctactcccccatgctcgcccggccgggcaccctg
cgcgacctctcggccgagaccgactgggcgtacgagatgaaatgggacggcatccgcatg
atcgccaccgtcggagcgggcgccgacggagccgtgcgtttcctcacccgcaacggcaac
gacgtcacggccgcgttccccgaactcgtcgacgacctgcgcgcggccctggccggccgg
gccgccgtgctggacggcgaggtggtcgcgctggaccgtcacaaccggcccgacttctcc
ctgttgcagacccggctcgggctcaccgacccgaccgacgtgcgccgggcccgccagggc
gcaccggtgcactacttcgtcttcgacctcctcgagcacgactggcgccccctcgtcgag
ctgccctatgccgagcgccggcaggcccttgaacggtgggtgcagggaacgggcaccgtt
caggtgccgccggcgttcgacgaccaggatgcggccacggtgctggctaccagctcccgg
ctgggcctggagggcatcatcgccaaggacacccgcagcggttacctcgccggccgccgc
gccgaccgctgggtgaagatcaagcacgtgaccagccaggaggtcgtcatcggcggctgg
cgtcccggagccggtcatcgctcctcgaccctgggctcgctcctggtggggatacccgcg
ccggccgggcccgaaactgccccgggcgcaccccggcggctgctctacgcggggcgcgtc
ggcacgggcttccgcgaccgggacctcaccgctctccgacggcgcctcgacgagctttcg
acggcggacaccccgttcgaggacgtgccggcggccgacgcggctgacgccgtctgggtg
cagccggccctggtcggcgaggtggacttctcggcctggacgccggccggccggctgcgg
caccccagctggcgggggctgcgggccgacaaggaccccgccgatgtggtgcgggaagaa
gccgtgcgggaagaagcagcgctgggggccgccgtggccgaggcgggtgattcccgatga
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