Cygnus atratus (black swan): 118258370
Help
Entry
118258370 CDS
T09349
Symbol
HELZ2
Name
(RefSeq) helicase with zinc finger domain 2
KO
K25165
3'-5' exoribonuclease HELZ2 [EC:
3.1.13.1
5.6.2.6
]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118258370 (HELZ2)
Enzymes [BR:
cata01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
118258370 (HELZ2)
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118258370 (HELZ2)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118258370 (HELZ2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
RNB
AAA_19
AAA_30
ResIII
AAA_22
UvrD-helicase
nSTAND3
AAA_16
DEAD
UvrD_C_2
UvrD_C
SLFN-g3_helicase
Viral_helicase1
zf-met
T2SSE
zf-C2H2_jaz
Bac_DnaA
Motif
Other DBs
NCBI-GeneID:
118258370
NCBI-ProteinID:
XP_035423021
LinkDB
All DBs
Position
16:complement(1447180..1473396)
Genome browser
AA seq
2823 aa
AA seq
DB search
MPTANGPTVPLGTLQRHVELLLVCSKCSVKENEITYQLRQVEHKCMYEILLARCRSRRST
AWRKVSRRPGFPNPARYAVCRYYMVGLGCSKHGNQCTFAWSPEEAMVWNFEREQQLERRQ
LKAAVLQAQLGGCSAAHPSAMATAAGEILSEFGGQFQEICKLCFFGCPQRISVGGQARLC
ESHHSWDPLLVHVVSDSRLKKQYIAIRPCPEFMPTLSYCCFVSKGQPCRHSIQRCQYAHS
DVEMAVWQAEREQGLLRSDLLPAAGLCAENGKPAAPVPVHFYCRVCLVTFSSQESFENHC
SSVEHVQMLSVDTSVQWVHRAPPLGLSAFTLCSRAEVCEMGSSCTKAHSTEELQEWIQRV
KVAVKKKKQAMKEGLLSYQDRLIAEYQMCSNEVLIMSEYVEGVTVVCQQPLHVQSEDKRL
KYQWKFRVHSQMPLQHVALLKRDPGATFYLSGNGLSRGLHYLRGEHVAMLPTLPPLALVE
VSMECCTLGVFEQWVVFDFGSRPVLLQKIKVKVGRREAPQHVPATTSREDGRAVDFVRWD
RGNRIIVRSVPRTSEDMDLLAKYKPAALSLDYRREGSVNAAITRLNYRERMHSFLFCEEE
AEQALIAKLNLRVLISLSNMIESLSMGMKFAQPGELFAKVPTPYNLSPDTDEGYLLNRSV
PTAFLALDPPVDNRVYEVSVENKATTENTIWLQIPNRCCSELNLKPKTSLNVEIQFQIDQ
LLFRQWHQAVDRLLDERLVLPDVASCTIPYCLRQPQEGNSKQKLAISFITGQVTSSRQVP
PLLIYGPFGTGKTFTLAMATLEIIRQPNARVLICTHTNSAADIYIREYFHNYVTNGHPWA
VPLRIISTDRPVSLTDPTTQMYCCLSEDQRSFRHPTQTEINRHRIIITTSMLSKNLKVAP
GYFTHIMIDEAAQMLECEALIPLSYATLETRIVLAGDHMQITPKLFCVGEGQSADHTLLN
RLFQFYQKEKHEVAMKSRIIFNENYRSTAGIIEFVSKHFYVGKGNAIHASGNIPPHPEIY
PLMFCHVPGVAERDMSLISWHNASEIIQVIEKVEEIYQRWPDKWGVRDLRRICVVSHGIQ
VSAIRQELRKKQLPEVVVENYENLPGREFRVIIISTVHTSESLRISASHNLEFFNEARVL
NTIMTRAQSQVIAVGDAVALCSHGQCSKVWKRFIQECIEKGSASPENLTMAQIKQAACDK
ESWRRRSPQRNDEDSDTDSWSSEADSLNPDDPILQELLDESKNMLVTVSEEGLLNVKPET
SNRWEDRQEYVSFSSQVMQEYLRMHPKMYKRCELVKERFDRASAITLNDSPAMTIQIKGR
VHCGTAFTGDEVLVEILKNSTDDSSGLRPQGKVVGILKRAERERTFICMMDEFDPRVMIP
IDPTVTKIFVPGLKEKPNVIPIRRLVNGKYRVVSCEKISQDTRRCQIFCVQIISWRDGFY
YPLGIITEILRVALTLEESLKILNLEYALERKYPAAVTRELAKYTSSKPNLTKENLRDCR
SYPTFTVDPEGAKDLDDAVSVRDLGRRYEIGIHIADVAGIIPKGSALDLEAKRRGVTYYP
PDQEPVCMFPPRISEDICSLLPQKERRAISLFVTIEKETDMVIKGIFTLSVIQSDRQLTY
SEAELCIQNYYKGGGDALCFDTLEDCIAVAYHFSRIHRKFRLQEDCFYDQLDEESSPGNR
GSHQMIEEFMIMFNSFVAEFLTNQENTRNVTPLRCQSEPNPQQLLAMKDKYSHIIPLSLH
LSHHLGDVSPNQESPKNVEFSLLAPIWEHLQSAAHLCDLHKMLDLIVTDDIHPKLAPVVL
EFRRLLSRSYFSRSNSTVLSKVGHYSLHVDSYTWASSPIRRYMDVVVQRHLHSVLRKKPT
IYSSDDIEFLCHDFNKKNSKALIYEKRARSMQMATQLKSQVLQKIAFVVDIEGMERYFKA
LFPLSRESLPDPQVINYRALQLIEQPMFIQKQKSVRMMWKRRMYSVETMKEPRLQAGALH
DHSITLFQTQIWQDMLAAIRSENFKSLAALLQKSKELYKRQVGWVRKSECSHYVEITLEL
SAGDTLQFQLTTDVSRGFLVPFVQLWCVTPGFDICLQHTEKPIDCFSAYATLPSKDKYKH
AAEYSKVWMPMSAMESASCAVAENDSIVLHDVKITWAKQRTSKGQLQGTFCLKKSFLEEC
SIEVDFNHCYLCIRLSGLKVRSLESNEECLSHGLQNLSLNNKDKSENKLVVDPDTYTWVA
HGITEEFSDDQKSDRSSQQTLNFYINYMSMENIPVEISQASASFTVELIPKMLPDVRKEN
AIRRLQHASELAKSIALGHEPPKKAVTKSKLLQQKSFDLPGSQRKLNESQRQAILNALKK
SFTLIQGPPGTGKTVVGTHIVYWFHKLNEETSKNEQLPSSDEDEPEKRKCILYCGPSNKS
VDVVAEMLLKMKDLKPLRVYGEAIETLEYPYPGSNRHLSRKALRDAKPKPELSKIILHHR
IRRRPNPFWQVICNFDTRVKEREEITEAEIKKYKHILTEARTYELKRHDVILCTCSAASA
NSLENLNVKQILIDECAMSTEPETLIPLVSHPHAEKVVLLGDHKQLRPVVNNDFCKSLGM
ETSLFERYQKQAWMLDTQYRMHKNICEFPSQEFYEHRLKTCPQLQHKRSVFYHKDNHCCP
IIFGHIEGKEQSLMISTEEGNENSKANPEEVEQAVRTAKQLTLDGTILPESIAILSPYNA
QVSEINKRLLKEGIRGVTVCTIMKSQGSEWRYVILSTVRSCPRSEIDRKPTKSWQKKYLG
FVTDPNQVNVGITRAQEGLCIIGNRYLLECNPLWRRLLQHYMQHNCYTTAQEIFVRKTSA
FRR
NT seq
8472 nt
NT seq
+upstream
nt +downstream
nt
atgcccacagcaaacggccccacggtgccactgggcaccctccagcgccatgtggagctg
ctcctggtgtgctccaagtgcagcgtgaaggagaacgagatcacctaccagctgcggcag
gtggagcacaagtgcatgtacgagatcctcctggcccgctgccgaagccggcgcagcaca
gcatggaggaaggtgtcgaggcggccaggcttccccaacccagcccgctacgccgtctgc
aggtactacatggtgggcttgggctgcagcaagcacgggaaccagtgcacgttcgcctgg
agcccggaggaggccatggtgtggaacttcgagagggagcagcagctggagcggcggcag
ctgaaggcggcggtgctgcaggcgcagctggggggctgctctgccgctcacccctccgcc
atggccacagccgccggcgagatcctgagcgagtttggggggcagttccaggagatctgc
aagctctgcttctttggctgcccgcagcgcatctcggtgggcggccaggcgcggctctgc
gagtcccaccacagctgggacccgctgctggtgcacgtggtgtccgacagccggctgaag
aagcagtacatcgccatccgcccctgccccgagttcatgccgaccctcagctactgctgc
ttcgtctccaaggggcagccctgccggcacagcatacagcggtgccagtatgcgcacagc
gacgtggagatggccgtctggcaggccgagagggagcagggcctgctccgctccgacctg
ctgccggcagcggggctgtgcgccgagaacggcaagccggcggcgcccgtgccggtgcac
ttctactgccgggtctgcctggtgaccttcagctcgcaggagagcttcgagaaccactgc
tcctccgtcgaacacgtgcagatgctctcggtcgacacctccgtccagtgggtccaccgc
gcgccgccgctcgggctgagcgccttcacgctgtgcagcagagcggaggtgtgcgaaatg
gggagcagctgcaccaaggcgcactccaccgaggagctgcaggagtggatccagagggtg
aaggttgccgtcaagaaaaagaagcaggccatgaaggaagggcttttgtcctaccaggac
cggctcattgctgagtatcagatgtgctccaacgaggtgttgattatgtctgagtacgtc
gagggcgttacggttgtgtgtcagcagcccctgcacgtgcagtcggaggacaagcggttg
aaataccaatggaagttcagggtccactcccagatgcccctgcagcatgtggcgctgctg
aagcgggatccaggggccaccttctacctctcggggaacgggctgtcacggggcctccac
tacctccgcggggagcacgtggccatgctgcccaccttgccgcccttggcgctggtggag
gtctccatggagtgctgcacgctgggcgtcttcgagcagtgggtggtgttcgacttcggc
agccgccccgtcctcctgcagaagatcaaggtgaaggtgggccggcgggaggccccccag
cacgtccccgccaccaccagcagggaggacggccgcgccgtcgacttcgtgcggtgggac
cgaggcaaccggatcatcgttcgcagcgtgccgaggaccagtgaggacatggatctgctg
gccaaatacaagcctgcggcgctctcgctggactaccggcgcgagggcagtgtgaacgct
gccatcacccggctcaactaccgcgagaggatgcacagcttcctcttctgcgaggaagaa
gccgaacaggctctgattgccaaactcaacctgcgggtcctcatctcgctgagcaacatg
atcgaaagcctctccatggggatgaagtttgcccagcctggtgagctgtttgctaaagtg
cctaccccatataacctctcgccggacacagatgaggggtatctgctgaacaggtccgtg
cccaccgctttcctggcacttgacccacctgtagacaatcgggtttacgaggttagcgtg
gagaataaagccaccacagagaacactatctggctacagataccaaacagatgctgctca
gagctgaacttgaagccaaaaacctccctcaacgtggagatccagttccaaattgaccag
ctgctgttccggcagtggcatcaggctgtcgaccgcctgttggatgagaggctggtccta
cctgatgttgccagttgcactatcccctactgcctcagacaaccacaggaagggaacagc
aaacagaaactggccatctccttcatcactggccaggtaaccagcagccggcaggtccca
cctcttctcatctacgggcctttcggcacggggaagacgttcacgttggccatggccacc
ctggagatcatcaggcagcccaatgcgcgggtgctgatctgcacccacaccaacagcgct
gctgacatctacatccgggagtatttccacaactacgtgaccaacgggcatccgtgggct
gttcccttgaggattatatccactgaccgtcccgtcagcctgaccgaccccaccactcag
atgtactgctgcctttctgaagaccagcgctccttccggcaccccacgcagacagagatc
aacaggcaccgcataattattaccacctccatgttatccaagaacctgaaggtcgcccca
ggttacttcacccacatcatgatcgatgaggccgctcagatgctggagtgtgaagctttg
attccactctcgtatgccactctcgagacccggatcgtcctcgctggggaccacatgcag
ataaccccaaagctgttctgtgttggggaggggcagtccgcagatcacaccctgttgaac
cgactctttcagttttatcagaaagagaagcatgaagtggccatgaagagcaggatcatc
ttcaatgagaattaccgttctactgcaggcataattgagttcgtctccaagcacttctac
gttggcaaaggcaatgctatccatgccagtgggaacatccccccccaccccgaaatctac
ccgctcatgttctgccatgtgcctggtgtggctgaaagggatatgtccttgatttcgtgg
cacaatgcttccgagataatacaagtgattgagaaagtggaggagatttatcagaggtgg
ccagacaagtggggtgtccgagatctgaggaggatctgcgtggtctcccacggcatacag
gtttctgcaatacggcaagagctgaggaagaagcagctaccagaagtagtggtggaaaac
tatgaaaacttgccagggcgggagttccgggtcatcatcatcagcaccgtccacaccagc
gagagcctgcgcatctcggcctcccacaacctcgagttcttcaacgaagcccgagtgctc
aacaccatcatgaccagggctcagtcgcaagtcattgcggtgggggatgcagtggccttg
tgctcccacggccagtgcagcaaggtgtggaagcgcttcatccaggagtgcatcgagaag
gggagcgcctccccagagaacctgacgatggcgcagatcaagcaggccgcgtgcgacaag
gagagctggagaaggaggagcccgcagcggaacgacgaggacagcgacacggattcctgg
agctctgaggccgatagcctgaatcctgatgatcccatcctccaggagctcttagacgag
agcaagaacatgctggtgacggtgtccgaagaagggctgctgaatgtgaagcctgagact
tcaaaccggtgggaagacaggcaggaatatgtcagcttctcctctcaggtgatgcaggaa
tatctgcgtatgcaccccaaaatgtacaagaggtgtgagctggtcaaagaaaggtttgac
agggcttctgccatcaccctcaatgactctcctgccatgaccattcagatcaaaggcagg
gttcactgcgggacggcctttaccggcgacgaagtgctcgtggaaatcctgaagaacagc
acagatgacagcagcggcctccgcccacaggggaaggtggtgggcatcctgaagcgtgcg
gagagagaacggaccttcatctgcatgatggacgagtttgacccccgggtgatgataccc
atcgatcccactgtcaccaaaatatttgtcccaggcctgaaagagaaacccaacgtcatt
cccatccgcaggcttgttaatgggaagtacagggtggtcagctgcgagaagatcagccag
gacacaaggagatgccaaatcttctgtgtccagattatctcctggcgggacggtttttac
taccctttggggataataactgagattttgcgtgtggccttgactttggaagaaagctta
aagatcctcaacttggagtacgccttagagaggaaatacccagctgctgttaccagggag
cttgccaaatacacctccagcaaaccaaacctcaccaaggagaatctgagggactgtcgg
agttacccaaccttcactgttgaccctgaaggtgctaaggatttggacgatgctgtcagc
gtcagggatcttggacgtcgctacgagattgggatccacatcgcggatgtggctggcatc
attcccaaaggcagcgccttggacctggaagcaaagaggcgtggtgtcacctactacccc
cctgaccaggagcccgtgtgcatgttcccaccccgcattagtgaagacatctgcagcctc
ctgccacagaaagagcgccgtgcgatctccttgttcgtcaccatagaaaaggagactgac
atggtgataaagggaatcttcaccctctctgtgatccagtcagacaggcagctgacctac
agcgaggcagagctctgcattcagaactactacaagggaggcggggacgccctttgtttc
gataccctggaggactgcatagctgtggcttatcacttctccaggattcaccgaaagttt
cggctgcaggaggattgcttctatgaccaactggatgaggaaagctccccaggtaacagg
gggtcccatcagatgatagaggagttcatgatcatgttcaatagtttcgtggctgagttc
ctcaccaaccaggagaacaccagaaatgtcactcctctccggtgtcagagcgaaccaaac
cctcagcagcttttagccatgaaagacaagtacagccatatcatccctttgtccctccat
ctctcacaccacctgggagatgtgtctcctaatcaagagtcccctaaaaatgtggagttc
agcctcctggcccccatctgggagcatttacagtcagctgcacatctctgtgatctccat
aagatgctagaccttatcgttactgatgacatccacccgaagctggcccctgtggtcctg
gagttcaggagactgctcagccgctcctatttcagtcgctccaactccactgtcctgtcg
aaagtgggccactactccctgcacgttgactcgtacacctgggcttcctctcccatccgc
cggtacatggatgtcgtggtgcagcggcaccttcattctgtgctccgcaagaagcccacc
atctattcttccgatgacatcgagtttctctgtcatgacttcaacaagaagaattccaag
gcgctgatttacgagaagagagcccgctccatgcagatggccacccagctgaagagccaa
gtcctgcagaagatcgccttcgtggtggatattgaaggaatggagaggtactttaaagcc
ctgtttccactgagtagagagagtcttccagatccacaggtaattaattacagggccctt
cagctgatagagcagcctatgttcatccagaagcagaagagcgttaggatgatgtggaag
aggaggatgtattctgtggagacgatgaaagaacccagactgcaggcaggtgctctccac
gaccacagcatcaccctcttccagacccagatatggcaggacatgctcgcggccatcaga
agtgagaattttaagagcctggccgctttgctgcagaagagcaaggagctctacaagcgg
caggtgggctgggtaaggaagagcgagtgctcgcactatgtggagatcaccctggagctg
agcgctggcgacacgctgcagttccagctcaccacggacgtctcccggggcttcctggtg
cccttcgtacagctgtggtgcgtgacgccaggtttcgacatctgtctgcagcacacggaa
aagcctatcgactgcttctctgcgtacgccaccctgccgtccaaagacaagtacaagcac
gcggcggagtatagcaaggtgtggatgccgatgagtgccatggagtctgcttcgtgtgca
gtggctgagaatgactctattgtcctccacgatgtcaaaatcacctgggcaaagcaaaga
acgagcaaagggcagctgcaagggactttctgcctaaagaaaagctttttggaggagtgc
tccattgaggtggactttaaccactgttacctgtgcattcgcctaagtgggctgaaggtt
aggagccttgaaagcaatgaggaatgccttagccatggcctccagaacctgtctttgaat
aacaaggacaaatcagaaaacaaacttgtggtcgatccagacacatacacctgggtggct
catgggatcaccgaggagttcagcgacgaccagaagtcagacaggagtagtcagcagact
ttgaatttttacatcaactatatgtctatggagaacatccccgtggaaatctcacaggct
tctgccagcttcacagtggagctcatacccaagatgctgccagacgtacggaaagaaaat
gcaattcggaggctccagcatgcctccgaacttgctaaaagcatcgctttaggccatgaa
cctccaaaaaaagcagtgacaaagtccaaactcctgcagcaaaaatcctttgatctccct
ggcagccagaggaagctcaacgagagtcagagacaggctattctaaatgctttaaaaaaa
tccttcacgctcatccaaggcccaccaggtacagggaaaactgttgttggaactcacatt
gtctactggttccataagctgaatgaggagaccagcaagaatgagcaattgccttcctct
gatgaagacgagcccgaaaagagaaagtgcatcttgtactgtggcccgtccaacaagtcc
gttgatgttgttgctgagatgctgctgaagatgaaggacctgaaaccactgagagtttat
ggggaggccatagagacgctggaatacccatacccagggagcaaccggcacctctcccgc
aaagccttgcgggacgcaaaaccaaagcctgagctcagcaagataatcctgcatcatcga
atccgaaggcgacccaaccctttctggcaggttatctgtaactttgacactcgagtgaag
gaaagagaagagataacagaagccgaaataaagaagtacaaacacatcttgacagaagct
cgtacatacgaactgaagcgccacgatgtcatcctgtgtacgtgctccgctgcgtctgcc
aactccctggagaacctcaacgtcaagcagatactcatcgatgagtgtgccatgtccaca
gagcctgagaccctcatccccttggtcagccatcctcatgctgagaaggttgttttgctt
ggggatcacaaacagctgcggcctgtagtcaacaacgacttctgcaagtctcttggcatg
gagacatcgctttttgagcgctaccagaaacaggcgtggatgctggatacacagtaccgc
atgcacaaaaacatctgtgagttcccatcccaggagttttatgaacatcggctgaaaacg
tgcccccagcttcaacacaaacgcagcgttttctaccacaaagacaaccactgctgcccg
atcatcttcgggcacatagaggggaaggagcagagcctcatgatttctaccgaggaagga
aacgagaactccaaagctaacccagaagaagtggagcaggcggtgaggacggcgaagcag
ctgacactagatggcaccatcctgccggagagcatcgccatcctgagcccctacaacgcc
caggtgtccgagatcaacaagcgcctcctgaaagagggcatccgcggcgtgaccgtctgc
accatcatgaagagtcaaggaagcgaatggaggtacgtgatcctgtcgactgtacgctcc
tgccctcgatctgagattgacaggaagcccacgaagagctggcagaagaagtacctgggg
ttcgttaccgacccaaaccaggtcaatgtcggcatcacccgagctcaggaaggactctgc
attatagggaaccggtacctcctggagtgcaaccctttgtggaggagactgcttcagcat
tacatgcagcataactgctataccactgcccaggagatttttgtcaggaagacttcagcc
ttccgccgatga
DBGET
integrated database retrieval system
