KEGG   Cygnus atratus (black swan): 118258740
Entry
118258740         CDS       T09349                                 
Symbol
KDM4B
Name
(RefSeq) lysine-specific demethylase 4B isoform X4
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
cata  Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:cata00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cata03036]
    118258740 (KDM4B)
Enzymes [BR:cata01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     118258740 (KDM4B)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     118258740 (KDM4B)
Chromosome and associated proteins [BR:cata03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    118258740 (KDM4B)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H PHD_2 JmjN PHD SLX1_C Tudor_3 DUF4537
Other DBs
NCBI-GeneID: 118258740
NCBI-ProteinID: XP_035423614
EnsemblRapid: ENSACYG00000009787
LinkDB
Position
26:complement(2839606..2931027)
AA seq 1111 aa
MGSENPSPQNPGCKIMTFRPTLEEFRDFGKYIAYIESQGAHRAGLAKVIPPKEWKPRKTY
DDIDDMVIPAPIQQVVTGQSGLFTQYNIQKKPMTVGEYRRLANSEKYCTPRHQDFEDLER
KYWKNLTFVSPIYGADISGSLYDADVEEWNIGNLNTLLDMVEHECGIIIEGVNTPYLYFG
MWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAKGFFPGSSQGCDAFLR
HKMTLISPSILKKYGIPFDRITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATLRWIDY
GKMATQCTCRKDMVKISMDVFVRVLQPERYDLWKQGKDIAVLDHMKPTALTSPELDAWNE
TKAELKAKLLRRIGDEEEDSKQRSHRKRSQPRRHKTEDQKSLGDVMAIETALEDVKVKEE
LKRGPDLEEEERSKAIEGEGDGKVKARPPKVKGERKKKHLFHQHQHHLQAPQPQQQQPPL
PPAPQQQLAEEEAPAARPPVPTAVPTSSTAEKSLPPAPLNIIHPSETPVEEDDFKPRPII
PMLYVVPRTKKVVFDKERMSCQQAFEQFATQKSPGWREQTVPLEIPVKEEENAEAGNTEI
ATEVSDLQTAAFSKMKMEIKKSRRHPLGKPPTRSPLSVVKQETSSDEEMFPFSGEEDMSD
PEALKSLLSLQWKNKAHNFPAERKFNAAAALSEPYCAVCTLFYPYNQSLQVDKEAAPVSV
GETTSFVHLSKCGQKTKPLIPEMCFTSSGENTEPLPSNSYIGEDGTSPLISCAKCCLQVH
ASCYGIRPDLVNESWSCSRCSANAWAAECCLCNLRGGALQMTTDGRWIHIICAIAVPEAR
FLNVIERHPVDISAIPEQRWKLKCVYCRKRMKKVPGACIQCSYEHCSTSFHVTCAHAAGV
PMEPDDWPYVVSITCFKHKAANQNIQFRREVTLGQTVITKNRNGLYYRCKVIGTTTQTFY
EVNFDDGSYSDNVYPESIISRDCIRMGPPPEGEMVQLQWTDGIVYKAKFIAAQISQIYQV
EFEDGSQLMVKRGDIYTLEEELPKRVKSRLSLSTGAPQEDVFSGDEVRAAKRPRLGNSRN
PEEYGQNQDYLAFMESLLQTQYQPGTQSNMF
NT seq 3336 nt   +upstreamnt  +downstreamnt
atggggtctgaaaacccgagtccgcagaaccctggctgtaagatcatgacctttcgtccc
accctcgaggagtttcgggacttcgggaagtacattgcttacattgaatctcaaggagct
caccgagcagggcttgccaaggtgatccctcccaaggaatggaagccacgaaaaacctat
gatgacatagatgatatggttatcccagctcccattcagcaggtggttactggccagtcg
gggttattcacccagtataacatacagaagaaacctatgactgtgggagagtaccggcgt
ctggctaatagtgagaagtattgtactccacgccatcaagattttgaagacttggagcgc
aagtactggaagaatctcacgtttgtctcaccaatttatggggctgatatcagcggctca
ctatatgacgcagatgtggaagaatggaatattggcaatctgaacaccctcttagacatg
gtggaacatgagtgtggtattattatagaaggtgtaaacactccgtacctctacttcggg
atgtggaagacaacgtttgcttggcatacagaggacatggatctctacagtatcaactac
ttgcattttggggagccaaaatcctggtatgctattcctccagaacacggcaaaaggttg
gaacgcctggcgaaaggattttttcctggaagctctcagggatgcgatgctttcctccgt
cacaagatgaccctcatttcgccctcgatcttgaagaagtacggcattccttttgaccgg
atcacccaggaagctggagagttcatgattacgtttccttacggttaccatgctggcttc
aatcacggcttcaactgtgccgagtctaccaactttgccactttgcggtggatcgactat
ggaaaaatggcaacccaatgtacttgccgcaaagacatggtgaagatttccatggatgtc
tttgtgagggttctgcaaccagaacgttacgatttatggaaacaaggaaaagatattgct
gtcctggaccatatgaaacccacggctctgactagcccagaactagatgcctggaatgag
acgaaggcagaattgaaggccaaattgcttcgcaggataggagatgaggaagaggacagc
aaacagcggtctcacagaaaaagaagtcagcccagaagacacaaaacagaggatcagaag
tctcttggggatgtcatggctattgaaactgccttggaagatgtgaaagtaaaagaggaa
ctgaaaagggggccagatctagaggaagaagagagaagcaaagcgattgagggagaaggt
gatggcaaagtaaaggcccgtcctccgaaagtaaaaggtgagaggaagaagaagcacctt
ttccatcaacaccagcaccatctgcaagcaccgcagcctcagcagcagcagccacccctg
ccaccggcaccgcagcagcagctggcagaggaagaggcaccagcagcacggccaccagta
cccacagcagtacccacatcgtccacagcagaaaagagcttgcccccggctcccctgaac
attatccatccctcggagacgccggtagaggaagatgactttaagcctcggcctatcatt
cccatgctttatgtggttccacggaccaaaaaggtggtgtttgacaaggagcgcatgtcc
tgccagcaggcgtttgagcagtttgcgacacaaaaaagtccaggttggcgggaacagacg
gtccctttggaaatccctgtgaaggaggaggagaatgcggaagcaggaaatacagagatt
gctacagaggttagtgatttacagaccgctgctttttcaaaaatgaagatggagataaag
aaaagtcgtcgtcatccactgggcaaaccacccacccgctccccattgtcagttgttaaa
caggagacctcgagtgacgaggaaatgtttccattttctggggaggaagatatgagcgac
ccagaggctttgaaatctttactctcccttcagtggaagaataaagcacataatttccca
gctgaaagaaaattcaatgcagctgctgcactgagtgagccatactgtgctgtctgtacc
ctcttctacccatataaccagtctttacaggtggacaaagaagctgcccctgtctctgta
ggggagaccacctccttcgtccacctttctaagtgcggacaaaagaccaagcctctgatc
ccagagatgtgctttacctcaagtggagaaaacacagagccccttccttcaaattcatat
attggagaagatggaaccagtcccttgatatcctgtgccaaatgctgcctgcaggttcat
gctagctgttatggaatacgtccagacttggtgaatgaaagctggtcttgctcacggtgc
tcagccaacgcatgggcagcggaatgctgcctgtgtaatctcaggggaggagctcttcag
atgaccactgatgggcggtggatccatataatctgtgctattgctgtccctgaggcccgt
tttctcaatgtaatagagcgtcatcctgtggatatcagtgctattccagagcagagatgg
aaactgaaatgcgtgtactgtcggaagcggatgaagaaagtgcctggtgcctgcatccag
tgctcctatgagcactgctccacttccttccacgtgacctgtgcgcacgccgctggtgta
cccatggagccggatgactggccctacgttgtgtccatcacttgcttcaaacacaaagca
gctaaccagaatattcagtttcgaagggaagtgacccttggacagactgtgatcacaaag
aaccggaatggactctactacagatgtaaagtgattggcacgacaacacagactttctat
gaagtaaactttgatgatggttcatacagtgacaacgtttacccggaaagcattattagc
agagactgcatccgaatgggaccgcctccagagggtgagatggttcaactgcagtggaca
gatggaatcgtctataaggccaagtttattgcagcccagatcagtcagatttatcaggtc
gagtttgaagatggttcccagctaatggtaaagcgtggtgatatttataccttggaggaa
gagcttccaaagagagtgaagtctcgcctgtccctcagcactggggcccctcaggaagat
gtattttcgggagatgaagtgagagcagccaagcgcccccggctggggaattcaagaaat
cctgaagaatatggacaaaaccaagattacttggcctttatggagagcctgttgcagaca
cagtaccaacctggaactcagagcaacatgttttaa

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