Cygnus atratus (black swan): 118261530
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Entry
118261530 CDS
T09349
Symbol
COL11A2
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118261530 (COL11A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cata00536
]
118261530 (COL11A2)
Glycosaminoglycan binding proteins [BR:
cata00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118261530 (COL11A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
118261530
NCBI-ProteinID:
XP_050572002
LinkDB
All DBs
Position
33:671660..687298
Genome browser
AA seq
1803 aa
AA seq
DB search
MAPHDPIDVLQVLQLHTLPEGVKKAPGFCSQHGAGAATADNAYRITRRAQLSAPTRQLFT
GKFPEDFSIMALVKAKPGVQAFLLSIYNRDGVQQLGLELGRSPVFLYEDQHGRPAPEDYP
LFRGIDLADGEWHRVALSIRGRTVTLLLDCQEKVKRPLPRSARPVLDTRGITVFGTRILD
EEVFQGDIQQLLIVADAQAAFDYCEHYAPRCAPGGPQAQEPPRQRHEYFEEDAEYYEYPY
YYTNSEDGPPQGGGPEKTMMMMMMNMAPASGQYPGGGQRPDNGISPEKYKRGPSCGSPPG
TGAIRKRGNSYQQAMGLPPTQEPHGAATTPDHLPAPQWDPDGASRGDTGPAAAPLPEEGA
AGPVYGHDSEEYRDYRDYHDGGLAELGPAMSAERQESGGAARGARGYKGEKGEPAVIEPG
MLVEGPPGPEGPAGMSGPPGTQGPPGAPGEPGERGPPGRAGLPGSDGTPGPPGTSMMLPF
RFGSGGGDKGPAVSAQEAQAQALLQQARLALRGPPGPMGYTGRPGPMGQPGSTGMKGESG
DFGPQGPRGPQGLTGPPGKPGRRGRPGADGARGMPGDPGVKGDRGFDGLPGLPGDKGHRG
ETGSQGMPGPPGEDGERGDDGEVGPRGLPGEAGPRGLLGPKGPPGIPGPPGVRGMDGPVG
PKGNLGPQGEPGPPGQQGTPGTQGLPGPQGATGPPGEKGPQGKPGLPGMPGSDGPPGHPG
KEGPPGTKGHQGPSGPQGPIGYPGPRGVKGVDGIRGLKGHKGEKGEEGFPGFKGDMGVKG
DRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPIGLVGEKGKLGVPGLPGYPGRQGPKGSQG
FPGFPGSNGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGSDGPHGPPG
ERGLPGPQGTNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGPAG
ESGPMGERGHPGPPGPPGEQGLPGPSGKEGTKGDPGPTGSPGKDGPAGLRGFPGERGLPG
TPGGPGLKGNEGPAGPPGPAGSPGERGGPGHGGPVGPPGRPGPQGPPGPAGEKGVPGEKG
PMGPAGRDGVQGPVGLPGPAGPPGGPGEDGDKGEVGEPGQKGSKGNKGEHGPPGPPGPIG
PVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPAGEKGETGDVG
PMAPPGPPGPRGPAGPSGADGPQGPPGGIGNLGPPGEKGDPGESGAPGIQGEPGVKGPRG
ERGEKGEAGAAGVAGPPGGKGPPGDDGPKGNPGPVGFPGDPGPPGEMGPRGQDGAKGERG
EDGEPGEPGSPGPTGENGPPGPLGKRGPAGSPGPEGRQGEKGAKGEPGAVGAPGKTGPVG
PQGLAGKQGPDGLRGLPGSVGEQGKPGTTGQAGPPGPVGPPGLPGLKGDTGAKGEKGHPG
LIGLIGPPGEQGEKGDRGLPGPQGSTGQKGETGIPGATGPIGPAGPPGLPGPAGPKGAKG
AMGQAGPKGERGPPGPPGHPGPPGEVIQPLPIQLPKKSKRSIDASKLVEEEEEEEGGERA
AADQAARDYADGMEEIFGSLNSLKQEIEGMRRPMGTQDNPARTCQDLQLSHPSLPDGEYW
IDPNQGCARDSFKVFCNFTAGGETCVFPSKDIEEVKMSSWEQEEPQRWFSQFKEGSRFSY
TDSDSQPLGVVQLTFLRLLSVSARQNFTYHCHRSVAWHSTTSGDHRHALRFLAANEEELS
YDTSPYIKAVTDGCAARKGSSQTVLEVSTPRLEQLPLMDVRVMDFGEPSQRFGFEVGPVC
FLG
NT seq
5412 nt
NT seq
+upstream
nt +downstream
nt
atggcacctcatgatcccatcgacgtgctccaggtcctccagctccacaccctgcccgag
ggcgtgaagaaggcgccgggcttctgctcccagcacggcgccggcgccgccaccgccgac
aacgcctaccggataacgcggcgcgcgcagctcagcgcgcccacccgccagctcttcacc
ggtaaattccccgaggatttctccatcatggcgctggtgaaggccaagcccggcgtccag
gccttcctgctctccatctacaaccgggacggcgtccagcagctgggcctggagctcggc
cgctcgcccgtcttcctctacgaggaccagcacggccgcccggcccccgaggactacccg
ctcttccgcggcatcgacctggccgacggcgagtggcaccgggtggccctgagcatccgc
gggcgcacggtgacgctgctgctggactgccaggagaaggtgaagcggcccctgccccgc
agcgcccgccccgtcctcgacacccgcggcatcaccgtcttcggcacccgcatcctggac
gaggaggttttccagggcgacatccagcagctgctcatcgtggccgatgcgcaggcggcc
ttcgactactgcgagcactacgccccccgctgcgcgcccggcggcccccaggcgcaggaa
cccccccggcagcggcacgagtactttgaggaggacgcggagtactacgagtacccctac
tactacacaaatagcgaggacgggcccccgcaggggggggggcccgaaaagacgatgatg
atgatgatgatgaacatggcgcccgcctccgggcaatatcccggtggtgggcaacgtccc
gataacgggatttcccccgaaaaatacaagaggggcccgagctgtggctccccaccaggg
accggggccatcaggaagcgaggcaacagctaccagcaggcaatggggctgccccccacc
caggagccccatggggccgccacaaccccggatcacctcccggccccgcagtgggacccc
gacggtgcgtcccgtggcgatacggggccggcggccgccccgctgccggaggaaggggcg
gccggccccgtgtacgggcatgactccgaggaatatcgcgactatcgcgactatcacgac
ggggggctggcggagctgggccctgccatgtcagccgagaggcaggagagcggaggtgct
gcgcgaggcgccaggggctacaagggcgagaagggcgagccggccgtcatcgaaccgggg
atgctggtggaggggccccccggccccgagggacctgcgggtatgtcaggaccaccgggg
acacaaggaccaccgggagccccgggagaacccggcgagaggggaccccccggccgcgcc
gggctgcctggctccgacgggacccccggcccccctgggacctccatgatgctgccgttc
cgctttggcagcggcggcggcgacaagggcccggcggtttcggcgcaggaggcgcaggct
caggccctcctgcagcaagcacggctggccctccggggcccccccggacccatggggtac
accggccgccccgggcccatggggcagcccggcagcaccgggatgaagggcgaatccgga
gatttcgggccccagggtccccgcggccctcagggactgacaggacccccagggaagcca
ggccggaggggtcgaccgggagctgatggtgcccgggggatgcccggcgatcccggtgtg
aagggtgaccgaggcttcgacgggctgccggggctgccgggtgacaaggggcacaggggc
gaaaccggctcccagggcatgccagggccccccggtgaggatggagagaggggagacgac
ggcgaggtgggaccccgagggctgcccggagaagcgggcccccgaggtttgctcggcccc
aaaggccccccgggaatccctggtcctccgggcgtgcgtggcatggacggtcctgtcggg
cccaaggggaacctggggccacaaggggagcccggaccccccggccagcaggggaccccc
ggcacccagggtctgccaggccctcaaggcgctacgggacctcctggagagaagggcccc
caaggcaaacccggcctccccggcatgcccggctccgatggccccccaggtcaccccggg
aaggagggaccccccggcaccaaaggccaccagggcccctcaggtccccagggccccatc
ggctacccaggcccccgtggcgtgaagggtgtcgacggcattcgagggctgaagggccac
aagggtgagaagggcgaggaaggcttccctggcttcaagggggacatgggcgtgaaagga
gaccggggcgaggtcggcgtgccggggtcccgcggcgaggatgggcccgaaggtcccaag
ggtcggacgggccccaccggtgacccaggccccattgggctggtgggcgagaagggcaag
ctgggagtgccagggctgcccgggtacccggggcgccagggccccaagggctcgcagggg
ttccccggttttccgggcagcaacggcgagaagggcgctcggggtctgtcggggaaatca
gggcccaggggcgagcgcggccccacgggtcccaggggccagcggggtcctcgaggagcc
accgggaagtcaggggcgaagggcacctctggcagcgacggcccccacggtcccccggga
gaaaggggcctgccgggaccgcagggaaccaacggcttcccgggacccaaaggacccccc
ggcccccccggcaaggatgggctccccgggcaccccgggcagcgaggagaagtcggtttc
caaggcaagactggcccccccggcccccccggggtggtgggaccgcagggaccagctggg
gagtccggccccatgggggagcgcggccacccggggccccccggccccccgggagaacaa
gggctgccaggaccgtctggcaaagagggcaccaagggagaccctggtcccaccggctcc
cccgggaaagatggccccgccgggttgcggggcttccccggcgagcggggcctgcccggc
accccaggtggcccagggctgaagggcaacgagggaccggcgggacccccaggacccgca
ggctcccccggggagagaggaggaccgggacatggtggccccgttggcccccctgggcga
ccgggaccacaagggccaccgggccccgccggagagaagggcgtccccggcgagaaaggt
cccatgggccccgctggccgggacggcgttcagggcccagtgggcttgcccggccccgcc
ggcccccccggtggccccggtgaggacggcgacaagggcgaggtgggcgagccgggccag
aagggcagcaagggcaacaagggcgagcacggtcctcccggtcccccagggcccatcggg
ccggtcgggcagcccggagccgccggcgccgacggggagccgggtgccagaggtccccag
ggccacttcggtgccaagggtgacgaggggacgcggggcttcaacggcccccccggcccc
atcggcctccagggtttgcctggcccggctggtgagaagggtgaaacgggtgacgtagga
cccatggccccccccggccccccaggcccccgtggccccgctggaccctctggagctgac
ggaccccagggaccccctggaggtatcggcaacctgggcccccccggggagaagggggac
cctggtgaatcgggggccccaggcatccaaggggaaccaggagtcaagggcccgcgagga
gagcgaggggagaaaggagaagccggagccgccggcgtggccgggccaccggggggaaaa
ggcccccccggcgatgatgggcccaaggggaaccccggtcccgttggttttcctggcgat
ccgggaccccccggtgaaatgggccccaggggccaggacggtgccaagggtgagcgcggg
gaggatggcgagcctggggagccgggctcgccaggtccaacgggcgagaacgggcctccc
gggcccctggggaagaggggccccgctggctcccccggccccgaggggcgtcagggcgag
aagggcgcgaagggagaacccggagccgtgggtgctcccggcaagaccggtcccgtgggg
ccccagggccttgccggcaagcagggaccggatggtctcaggggtctgccgggctcggtg
ggagaacaaggcaagccgggcaccacagggcaagctgggccaccgggaccagtgggtccc
ccaggtctccccggcctcaaaggtgacaccggtgccaaaggagagaagggccaccctggt
ctcattggcctgatcggacccccaggggagcagggggagaagggagaccggggtctgccc
ggcccccagggctccacggggcagaaaggagaaaccgggatccctggagctaccggaccc
atcggccccgctggcccccccggccttcccggcccagcaggtcccaaaggtgccaaggga
gccatgggccaagcaggacccaaaggtgaacgcggacctccgggaccccccggacacccg
gggccccccggggaggtgatccagcccctgcccatccagctgcccaagaagagcaagcgc
tccatcgacgccagcaagctggtggaggaggaggaggaggaggagggtggagagcgagca
gctgccgaccaggcggctcgcgactacgccgacggcatggaggagatcttcggctccctc
aactccctcaagcaggagatcgagggcatgcgccgcccgatgggcacccaggacaacccg
gcccgcacctgccaggacctgcagctcagccaccccagcctgcctgatggcgagtactgg
attgaccccaaccagggctgcgcccgagactccttcaaggtcttctgcaacttcacagcg
ggcggggagacctgcgtctttcccagcaaggacatagaggaggtgaagatgtcgtcctgg
gagcaggaggagccccagcggtggttcagtcagttcaaggagggcagcaggttctcctac
acagactcggacagccagccccttggcgtggtgcagctgaccttcctacggctcctcagt
gtctctgcccgccaaaacttcacgtaccactgccaccgctcggtggcctggcacagcacc
acctccggggaccatcggcatgccctccgcttcctggctgccaacgaggaggagctcagc
tacgacaccagcccctacatcaaagctgtgacagacggctgcgcggcacgaaagggctcc
agccaaacggtgctagaggtgagcacgccccgcctggagcagctcccgctaatggatgtg
cgagtcatggactttggcgagcccagccagaggttcgggttcgaggtgggaccagtctgt
ttcctcggctag
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