Carassius auratus (goldfish): 113053695
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Entry
113053695 CDS
T07313
Symbol
col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
caua04147
]
113053695 (col18a1)
00535 Proteoglycans [BR:
caua00535
]
113053695 (col18a1)
00536 Glycosaminoglycan binding proteins [BR:
caua00536
]
113053695 (col18a1)
Exosome [BR:
caua04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113053695 (col18a1)
Proteoglycans [BR:
caua00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
113053695 (col18a1)
Glycosaminoglycan binding proteins [BR:
caua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113053695 (col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF1554
CBM_X2
Motif
Other DBs
NCBI-GeneID:
113053695
NCBI-ProteinID:
XP_026074731
Ensembl:
ENSCARG00000020562
UniProt:
A0A6P6KTI2
LinkDB
All DBs
Position
34:complement(5812124..5891901)
Genome browser
AA seq
1700 aa
AA seq
DB search
MSKLRFWLCLFILVCLRICHTHGWFWFDDSKENVKGTQTPAYLTTIRPTSPPRTEPPRTT
GTGASVTEVPKKVSYDGDHFEGKSESRSRLGIESESITGSWSEFASGSGSGSSQFERQDG
YVTTTNVLGIATENASLHIRNLTLETKEDQLDGLQSINDTTDSRFNKSMNVPYKNVSTYN
DTNGNNSTEHDYDNMSLYSSEYSVSENVLTIESEFLVASMPKVIESPRCLPVDSGLPFCT
KMGVESFAVPNFLNQSSVEEVQAIMTQWAWLLRSNCHHSLEWFFCLLLTPRCGPPGLPPL
LPCHSFCEVLRDSCWTLLDEGRLPVECHSLPEEKHDGYRCLSVSNQKEESGVSLLQLIGD
PPPDGVSKVFDHDNSPGYVFDQSSNVGQSAAAHLPNPFFRDFSLIFNIKPTSSKPGVIFS
ITDPTQNYMYVGVKLSAVEKGKQYIIFYYTEPDSESSYEAARFSVPSMVNTWTRFSISVL
NERVSLYFNCDSDPQVMSFERSPDDMDLDAAAGVFVGHASGADPDKFLGVIGDVRVLKDP
GAAERHCEEDEDDFDAGSGDYGASGDGEGRPSIQPTPPSSRPIQQPPVTSRPHVDKQLTG
SVDSSRSYGDSRQTSGSYGGSQKTSGPYGDSRKTSISYGDSWQTSGSYGVKGEKGDRGEK
GDKGERGLAGPKGDSGSGSGGSAKGEKGDAGEKGLKGSSGFGYPGSKGDRGPPGPPGPPG
PPGPSAEVEVRGDGSVMQKVTGPRGPPGPPGPPGPAGAEGEPGDPGEDGKAGQVGPPGFP
GTPGSPGPKGEKGERGESQPGPRGPPGLPGPPGPPSRSDRPTFVDMEGSGFDLDSVRAMP
GLPGLPGPAGPPGLPGPPGPGSSGSGGFGPPGPPGQNGAPGQPGLPGLPGADGKPGLAGP
KGEKGDAGELGLPGPVGEKGAKGSSGSPGLPGEGGLAGLPGPMGPVGPPGPPGPPGPRYH
VGFDDMEGSGVHFSSVPGVRGPVGIQGPPGVPGPQGTPGVPGIPGEKGSEGPQGNDGQPG
LDGFPGPQGPKGNKGDRGDRGEPGRDGAGLLGPPGPPGPPGQIIYRYYENNDETGGARPQ
GGAGLPGQAGFPGPVGPKGDQGDPGSPGYGIKGEKGEPGLILGPDGNPFYLGGVIGQKGE
SGFPGPVGPPGPAGPPGLKGEFGMPGRPGRPGINGYKGEKGESGSGSGYGYPGPPGPPGP
PGPPGPAVPLDRFGRYEDYSRQYPAMKGEKGDQGSPGVPGSPGFSSNIDIYALKNEMKGE
QGEPGLKGEKGEPGGGFYDPHFGAVQGPPGNPGPPGPKGDSIRGPPGPQGPPGSPGVGYD
GRPGNQGPPGPPGPPGSPSLPGAYRPQLSIPGPPGPPGPPGVPGTGSGVTFLRSYDIMMA
TARRQSEGALIYILDRNDLYLRVRDGVRQVMLGDYNPFYGELDNEVAAVQPPPVVHYSQD
HTADNGAKQISPPHQPIEFPRREPENRNPNPPDSRYPDPRYPPYTEPIQPHRHPVQPERN
PSTPARRPSPPVNQPEGHIHTSGPGLHLIALNSPQVGNMRGIRGADFLCFQQARAVGLKG
TFRAFLSSKLQDLYSIVRRSDRETLPIVNFKDQVLFRSWESLFSDSESRMKDSAPIYSFD
GRDVLRDSAWPEKMIWHGSDGRGHRQTDNYCETWRAGDRAVTGLASSLQAGQLLQQTSSS
CSSSYIVLCIENSYMTQSKK
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagctcaggttttggctttgcctctttattctggtgtgcttgaggatatgccac
acacacggctggttctggtttgatgactcgaaagaaaatgtgaagggcacacagacaccg
gcctacctgacaaccataaggcccacatcaccaccgaggacagaaccgcccagaacaaca
ggtacaggtgcttccgtaactgaggtcccgaaaaaggtcagttatgatggagatcatttc
gaggggaaatcagagtctaggtctaggttggggattgagtcagaatctataactgggtca
tggtctgaatttgcttctggatccggatccggatcttcgcaatttgaaagacaggatggc
tatgttacaacaaccaacgttttgggaattgctactgaaaatgcaagtttgcacataaga
aatctcacattggagaccaaagaggaccagttggatggacttcagagcatcaacgacaca
acagacagtcgatttaataaaagcatgaatgttccttataaaaatgttagcacttataat
gatacaaatgggaataattctacagagcatgattatgataacatgtcattgtattcctct
gaatacagtgtctcagaaaatgtactaaccattgaaagtgagtttttagtagctagcatg
ccaaaagtcattgaatccccacgctgcttgccagtcgattctggtttgccgttttgcact
aaaatgggagtggagagtttcgcagtgccaaattttctcaatcaaagcagtgtggaggaa
gttcaggcaattatgacccagtgggcatggcttttgcggtcaaactgccatcatagcttg
gaatggtttttctgcctgctgttgaccccgcggtgtggcccgcctggactaccgcccctg
ctgccctgtcacagtttctgcgaggtcctgcgtgacagttgttggacactcctggatgag
ggccgcctccccgtggagtgccactctctgcctgaagagaagcatgatgggtatcggtgc
ttgtcagttagtaaccagaaagaagaaagtggagtgtcgttgttgcagttaattggtgat
cctccacctgatggcgtctccaaagtctttgaccatgataacagccctggctatgtgttt
gaccaaagctccaatgtgggtcagtcagccgcggcccacctgcccaaccctttcttccgt
gacttctcccttatcttcaacattaaacccacgtcctccaagcctggtgtcatcttctca
atcactgacccaacccagaactatatgtatgttggtgtgaagctgtcagcggtggagaag
ggcaagcagtatatcatcttctactacactgagccagactcggagagctcatatgaggcg
gccagattttccgtgccttccatggtgaacacctggacccgcttttccatcagtgttttg
aatgagcgtgtttccctctacttcaactgtgactcagatcctcaggtcatgagttttgag
cggtctccagatgatatggacctggatgccgcggctggagtgtttgttggtcatgcaagt
ggagcagaccctgataagtttttgggtgttatcggcgatgtaagagtgttgaaagaccct
ggggcggctgaacggcactgtgaagaagatgaggatgacttcgatgcgggatcaggtgat
tacggagcaagtggagatggagaaggacgaccatcaatccagccgacacctccctcctct
cggccgatccagcagccgccggtcaccagcagacctcatgttgacaagcagctgacaggc
tcagtcgattcctctcggtcctacggtgattctcgacaaacatctggctcatatggcggt
tctcaaaaaacatctggtccttatggggattcccgaaaaacctctatctcctacggtgat
tcctggcaaacatctggctcatatggtgtaaaaggagagaaaggagacagaggagagaag
ggtgacaaaggtgagaggggtcttgcggggccgaagggtgattcaggatctggatctggt
ggcagtgctaaaggagagaagggggacgcaggagagaaaggattgaagggtagttctggt
tttggttatcctggatcaaagggtgaccgtggccctcctggtcctccagggcctcctgga
cccccagggcccagtgcagaggtagaagtgaggggagatgggtccgttatgcagaaggtg
acaggaccaagaggaccacctggaccaccaggaccgcctggccctgctggagctgaaggg
gagccgggtgaccctggtgaagatggaaaagctggccaagttggacctccaggttttcca
ggaactcctgggagtcctggacccaaaggagagaaaggagagcgaggtgaaagtcagcca
ggacctcgaggtcctccagggcttccaggcccaccgggacccccatctcgctctgatagg
cctacatttgtggacatggagggttctggatttgatctggacagtgtgcgggcaatgcct
ggtttgcctggcctacctggtcctgctggtccccctggcctccctggtccccctggccct
gggtcttcaggctctggtggttttgggcctccaggtcctcctgggcaaaatggagctcca
ggtcaaccgggacttccaggtttaccaggggctgatggaaaaccaggcttagcaggccct
aaaggagagaagggtgatgccggtgagctgggcctacctggacctgtgggagagaagggt
gccaaaggttcttctggttcccccggccttcctggagagggtggacttgctgggcttcca
ggaccaatgggacctgttgggccaccagggccacctggtcctcctggcccaagatatcat
gttggttttgatgatatggagggttctggtgttcacttcagttcagtccctggagtaaga
ggaccagtaggaatccagggacctcctggtgtcccaggaccacaaggtacacctggtgtc
ccaggaattcctggtgagaaaggcagtgagggacctcagggaaatgatggccaacctggt
ttggatggatttcctggaccgcagggaccaaagggcaacaagggagacagaggtgaccgg
ggtgaacctggtcgagatggagctggacttctaggtcctcccggcccccctggaccacct
ggacaaattatttatcgttattatgaaaataatgatgaaactggaggagcaaggcctcag
ggtggggctggtcttcctggtcaagcaggattcccaggcccagtaggaccaaagggtgac
caaggagatcctggatcaccaggctacggcattaagggtgagaaaggagaacctggactt
attcttggacctgatggaaacccattttaccttggtggagtgataggccaaaagggtgag
agtgggtttcctggaccagtcggacctcctggtccagctggacctcctggtttgaaaggt
gaatttggaatgccaggcagacccggtcggccaggtataaatggatacaaaggagagaag
ggagagtcagggtcaggctctggatatggctacccaggtccccctggtcccccaggaccc
cctggtccccctggacctgctgtgcccttggacagatttggtagatatgaagattattcg
agacagtatccagctatgaaaggagagaaaggagaccagggttctcctggagttccaggg
tcgccaggtttttcctctaacattgatatctatgccctcaagaatgagatgaagggggag
cagggggagcccggtcttaaaggagagaaaggagagccaggaggaggattttatgaccct
cattttggagctgtacagggaccaccaggaaaccctggacctcctggacctaaaggagac
tcaatcagaggtccccctggaccacagggtccaccaggatcacctggtgttggttatgat
ggtcgtccaggaaaccaaggacctcctggaccccctggacctccagggtcaccatcattg
ccaggagcctacaggccacaactcagtattcccggacctccaggtcccccggggcctcct
ggagttcctggcactggatctggagtgactttcctgaggtcttatgacataatgatggct
acggcacgcagacagtctgaaggtgctttgatttacattttggacagaaacgatctctac
ctcagagttcgggatggtgtcagacaagtgatgcttggagattataaccccttctacgga
gagctggacaatgaagtggcagcggtccagccgccccctgttgttcactattcccaagac
cacacagctgacaatggagcaaaacagatttctccaccgcaccagccgatcgagtttccg
aggagggagccagagaatagaaaccccaatccaccagactcccgttacccagatccacga
tacccaccctacaccgaacccatacaaccacacagacaccccgttcaacctgagaggaac
cccagcactccagcccgccgccctagccctcctgtcaatcaaccagagggccacatccac
acttctggaccagggttgcatcttatcgccctgaattctccacaagtgggcaacatgaga
ggcattcgtggggcagacttcctgtgcttccagcaggctcgggccgtgggcctgaaggga
acgttcagagccttcctgtcttccaaacttcaagatctctatagtatcgtccgcagatct
gacagagagacgttaccgattgttaacttcaaggatcaagtccttttcagaagctgggag
tctctcttcagcgactcagagagcaggatgaaggacagtgctcctatctactcatttgat
ggcagagatgtcctgcgggacagtgcctggccagagaagatgatctggcatggttccgat
ggcaggggtcacaggcagacggataactactgtgagacgtggagggccggagaccgtgcg
gtgacaggcttggcctcgtctctgcaggctggccaactcctccagcagacctccagcagc
tgctccagttcctacatcgtgctgtgtatcgagaacagctacatgacacaatccaagaaa
taa
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