Carassius auratus (goldfish): 113092121
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Entry
113092121 CDS
T07313
Symbol
usp40
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 40
KO
K11869
ubiquitin carboxyl-terminal hydrolase 40 [EC:
3.4.19.12
]
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
caua01002
]
113092121 (usp40)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
caua04121
]
113092121 (usp40)
Enzymes [BR:
caua01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
113092121 (usp40)
Peptidases and inhibitors [BR:
caua01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
113092121 (usp40)
Ubiquitin system [BR:
caua04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
113092121 (usp40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
YukD
Motif
Other DBs
NCBI-GeneID:
113092121
NCBI-ProteinID:
XP_026113509
Ensembl:
ENSCARG00000000355
UniProt:
A0A6P6NYF5
LinkDB
All DBs
Position
6:5369439..5385584
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AA seq
1266 aa
AA seq
DB search
MFGDLFEEDGDSFSSTSGKGVKGRECEPPPPRGKIKLCGIKNQGGTCYLNSLIQTLLFTP
EFREELFCLGPDELGCLADKDKPEAKVRVIPLELQRLFSHLLLVDEQTASTTDLTDSFGW
TNNEEMGQQDVQELNRILFSALESSLVGTSGSSLIHRLYHGTLVNQITCKECGNISERQE
DFLDLTVSVRGVSGLEEALWNMFVEEEMFEGNNLYRCSRCEQLVRAAKSAKLRQLPPFLT
ISLLRFNFDFAKCERYKETGSYVFPLIFNLRPFCEQNNWPDSEYSYELFSVIIHKGGCYG
GHYHVYIKDIDQLGHWEAPEEEVKVKVKTQRQEDKVGEKKKESENSVDTEDPLSVLTDVL
AQEESRSVLVDQLGQKLMNKTGMPXSKKYKKQYGTISKFLQNHPEVFLLVSNGTRVALKA
AGPATTEPSPTEPGSSASANNSPDNTELQTAGDTEGPDGCHWFDLNDSTVTAISEKDIEK
QFQGKESAYMLFYRKTTMKRPPEAIGNPAYKVPPHLVEMVQEMNARLQQRRAEFDASSNS
VEVRLHLAPHYHYQNGALHPISPDEDSIITVTFDRRKTVGDLRLAIYQMQDLWEGDMALT
LAKNVPAGLHLYDTLTDDQISLYSAGVSNGSDLFVWNGREVSGVAVKTGLEWEPVLLTVL
RPSLEELGCEDGSGVEDTDGSGLVRSMKGFAGGATLSTVLEALGPQEALLCQEQSRPGAT
GGGASGWRVFPPQDMQRTLRELSLKDGDALLLLQPEEIDSSIFSLSGDMVTVTTPSDCRW
LQVEFCPQSATKEEEEEEEEQGKKRSKVSASGNMLLAEVKEKALEELRLQDELSGVECCL
RQMDRTGKLLPPVHEHLSVRDAGIRLMTSLYLCPGPVPTETQLFLYFSVGLAPSVGQELE
IIVEESLTVKECLKEMLQMAKLDGESWHLRRVDWCEEIGEPLMDEHASLKEAKVMHGDTL
VLVEGRLPPKGYLKLSVKLYIDAIDSSSVPELNHTAESLSIEGLTTEGSGSEMRFIGHVE
ISEEASLDDLKTQMMTLPALQDVCVPSPAFLRVWLLEGKKLSRILRGNQQTLRKLKLGNG
AEVCVQRLMNEENLGLKDLLLRVQMGVPGEKAYYPSEEFLWDAGRDGTPRGLYAALASRY
GLTPDNLLLAKHLPDKHTWMPISNWTQQVSKKKKKRKAESLQAAPFYLKDGDTIGVKNLL
IDNNKEFTTLEDEIGQQSLREEAANHNTRGHLATGDYSKDIGSKKSGPTKNRKPEVALSI
NVGLFR
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgtttggagatctttttgaggaggacggggatagcttttcctctacatctggcaaaggt
gtgaaggggagagagtgtgagcctccaccacccagagggaaaatcaaactctgcgggatc
aagaatcagggtggcacctgttacctcaactccctgatccagactttgctgttcacacca
gagtttagggaggagctgttctgtctcgggccggatgaattaggatgtctggctgacaag
gacaaaccagaggcaaaggtccgtgtgattcctctggagcttcagagactgttttctcat
ctgctgctggtggatgaacaaaccgcctccacgacagacctgaccgacagttttggctgg
acgaacaatgaggagatgggtcagcaggatgtgcaggagctgaaccggatcctgttcagt
gctctggagagctctttagtaggcacttcaggcagcagtctcatacaccggctgtaccat
gggacgcttgtcaaccagatcacctgcaaggagtgtggcaacatcagcgagagacaggag
gactttctggacctgactgtgtcagtgcgtggtgtgagtgggctagaggaggcgctgtgg
aacatgtttgtggaggaggagatgtttgagggtaataacctgtaccgctgcagcagatgt
gagcagctggttcgggccgctaagtctgctaaactgagacaacttccaccattcctgacc
atttctttgttgaggttcaactttgactttgccaagtgtgagcgctacaaagagaccggg
agctacgtttttcctcttatattcaacctcagaccattttgtgagcagaacaattggccc
gactcagagtattcatacgagctcttctccgtcatcatacataaaggaggttgttatgga
ggtcattatcatgtctacatcaaagacatcgatcagctcggccactgggaggcaccggag
gaagaggtaaaagtgaaggtgaaaacccagagacaagaggacaaagttggtgaaaaaaag
aaagagagtgaaaattctgttgacaccgaggatcccctctctgttctcactgatgttctg
gctcaggaggagtccagatctgttcttgtagaccagctgggccaaaaactgatgaataaa
acgggcatgccgtagagcaaaaaatataaaaaacagtatggcaccatcagcaagtttctt
cagaaccaccctgaagtgtttctgctggtctccaatggaacccgtgtagctctgaaagct
gctggtcctgcaacaacagaacccagtccaacagagccaggcagttcagcttcagccaat
aacagcccagacaacaccgagctgcaaacagcaggagacactgaaggccctgatggatgt
cattggtttgacctgaatgactccactgtgactgccatttcggagaaggacatagagaag
cagtttcagggaaaagagagtgcctacatgctcttttacaggaagacaaccatgaaaaga
cctccagaagccataggaaaccctgcgtacaaagtgcctcctcacctggtggagatggta
caagagatgaatgcaagacttcagcagagaagagctgagtttgatgccagcagcaacagt
gttgaagtgcggctgcatctggcccctcattaccactaccaaaatggagccctgcacccc
atatctccagatgaagactccatcatcacagtcaccttcgaccgccgaaagactgtggga
gacctgcgattggccatctaccagatgcaagatctttgggaaggagacatggcattgaca
ttggctaagaacgtgccagctgggttacatttgtatgacacattgacagatgaccagatc
tccctgtatagtgctggtgtgtctaatggctctgatctctttgtgtggaatggaagagag
gtcagtggtgtggcagtgaaaactggcctcgaatgggagcctgttttgctcactgtgttg
cgtccctctttggaggagctgggatgtgaggatgggtcaggggtcgaagacactgatgga
tccggtctggtgcgttccatgaagggctttgctggtggggccactctgagtacagtgctc
gaggctttaggacctcaagaggccttactgtgccaggagcagagccgtccaggggccact
gggggtggggcgagtgggtggagggttttccctcctcaagacatgcagaggacactgaga
gagctgtctctgaaggacggggatgctctactgctactgcagccagaggaaatagacagc
agtatcttcagcctcagcggtgacatggttactgtgacaacgccctcagactgccgctgg
ctgcaggtggagttttgcccacagagtgcaacaaaggaggaagaggaggaggaggaggag
caggggaagaaaaggagtaaagtctcagcctcagggaacatgctgctggcggaggtgaag
gaaaaagctcttgaggaacttcgcttacaggatgagctcagtggtgttgaatgttgtctg
aggcaaatggatagaactggaaagcttttaccaccagtgcatgagcatttgagtgttcgg
gatgcagggatcaggttgatgacttcactctacttgtgtcctggaccagtgccaacagaa
acacagttgttcttgtacttcagtgttggtctagcaccctcagttggtcaggagttagag
attattgtagaggagtctctaacagtcaaagagtgccttaaggaaatgttgcagatggcc
aaactggacggtgagtcatggcacttaagaagagtggactggtgtgaggaaattggagag
ccacttatggatgagcatgcatctctgaaagaagcaaaggtcatgcatggggacacactg
gtgctggtggaggggcgtctgcctccaaagggttacctgaaactgtctgtgaagctgtac
atagacgcgattgacagctccagtgttccagagctgaaccacacagcagagtccctgagc
atcgagggactcaccacagaggggtctggatcagagatgagattcattggtcatgtggag
atatcagaggaggcttcccttgatgatctcaagactcagatgatgactctgccggcactt
caggatgtttgtgtgcccagtcctgcatttctgcgtgtatggctgctagagggcaagaaa
ctgtccaggatactcagaggaaaccagcagacactcaggaagctgaagctggggaatggg
gcggaggtgtgtgttcagaggctgatgaacgaggagaacctgggcctgaaggatttattg
ctgagggttcagatgggggtgccaggagagaaggcgtattatccttctgaggagtttttg
tgggatgcagggcgggacggtacccccaggggcctatacgctgctctggcatcccggtac
ggtctcactcctgacaacctgctcctggctaaacacctgcctgacaaacacacctggatg
cccatttccaattggactcagcaggtctccaaaaaaaagaagaagaggaaagctgagagt
ctccaagctgctcccttctacctgaaagatggagatacaataggtgtcaagaatctgcta
atagacaataataaagaattcactactctggaagacgagattggtcagcagagcctcagg
gaggaggcagcgaatcacaacacaagggggcatcttgccactggagactattcaaaagac
attgggtccaagaagtcgggcccaactaaaaaccggaaaccagaggtggccttatcaatc
aatgtggggttgttcaggtaa
DBGET
integrated database retrieval system
