Caulobacter sp. S6: KCG34_03930
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Entry
KCG34_03930 CDS
T07744
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
caul
Caulobacter sp. S6
Brite
KEGG Orthology (KO) [BR:
caul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caul03019
]
KCG34_03930 (hrpB)
Enzymes [BR:
caul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KCG34_03930 (hrpB)
Messenger RNA biogenesis [BR:
caul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KCG34_03930 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
AAA_22
AAA_19
nSTAND3
ResIII
Motif
Other DBs
NCBI-ProteinID:
QUD89045
UniProt:
A0A975G0V0
LinkDB
All DBs
Position
complement(856601..859039)
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AA seq
812 aa
AA seq
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MLPIHDALPALKAALAERSCAVVVAPPGAGKTTVAPLALKDEPWVAGGKLIVLEPRRLAA
RAAAARMAQSLGEPVGETVGFRVRLESRVSARTRIEVVTEGVFTRMITADPGLDGVAAVL
FDEFHERSLDADLGLAFARDSQGLLRPDLRLVVMSATLDGAAVARLLDGAPVIESQGRAY
PVETRYLGRDPAARIEDQAERAVRKALAEAEGGVLVFLPGQGEILRTAERLAARFEGSNI
DIAPLYGALEPKDQDRAIAPSPPGRRKVVLATAIAETSLTLEGVRVVIDAGLARVPRFDP
ASGLTRLETVRVSRASADQRRGRAGRTAPGVCYRLWDEPETRSLIAFERPEILETDLSRL
ALDLARWGARDADELSLLDRPPAAALAEARALLTRLGALDAAGALTAHGRAMGELPLAPR
LAHMVMAGAARGAGRRAARIAALLTERGLGGRSADIATRLEGFARDSGPRAKGAAALADR
WARLAGGGDSKGEIDDGLLVAEAFPERIAKARGKPGEYQLANGRGVTLDPADSLAREPWL
AVAELGAGEARDRILLAARLDETALRVAFADRLVREERLEASPNGRLRAKETLWLGRLAV
EERLITDPDPALIRAALLDEVRRRGLEALPWGAASRSLRERAAFVRASGGEAPDFSDEAL
LADLEAWLGPLLAGRTSLNGLADSDLLEALRGLAPWDVLRRLDAEAPVRWTAPTGTTHAI
DYAAEGGPRVDIRVQELFGLNVHPTVGRSVPLTLALLSPAHRPIQLTKDLPGFWRGSWSD
VRKDMRGRYPKHVWPEDPAAAAPTLRAKPRAG
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgctgccgatccacgacgcccttccggccctgaaggccgccctcgccgagcgcagctgc
gccgtggtggtggccccgccgggcgccggcaagaccacggtcgcgcccctggccctgaag
gacgagccctgggtagccgggggcaagctgatcgtcctggagccgcggcggctggcggcg
cgggccgcggcggcgcgcatggcccagagcctgggcgagcctgtcggcgagaccgtcggc
ttccgcgtgcggctggaatccagggtttcggcccgcacccggatcgaggtggtcaccgag
ggcgtcttcacccgcatgatcaccgccgaccccggcctcgacggggtggccgcggtgctg
ttcgacgaattccacgagcgcagcctcgacgccgacctgggtctcgccttcgcccgcgac
agccagggcctgcttcgccccgatctgaggctggtggtcatgtccgcgaccctggacggc
gcggcggtggcgcggcttttggacggcgccccggtgatcgagagccaggggcgcgcctat
ccggtcgagacccgctacctcggccgcgatcccgcggcccggatcgaggaccaggccgag
cgggcggtgcgcaaggcgctggcggaagcggagggcggcgtcctcgtcttcctgccgggc
cagggcgagatcctgcgcaccgccgagcggctggccgcgcgcttcgaaggctccaacatc
gacatcgccccgctctacggcgccctcgagcccaaggaccaggaccgggccatcgctccg
tcgcccccaggccggcgcaaggtggtgctcgccaccgccatcgccgagaccagcctgacc
ctcgaaggcgtccgcgtcgtgatcgacgccggcctggcccgtgtcccccgcttcgatccg
gccagcggcctgacccgcctggagaccgtgcgcgtctcccgcgcctcggccgaccagcgg
cgggggcgggcggggcgcaccgcccctggggtctgctaccgcctgtgggatgagcccgag
acccgctccctgatcgctttcgagcggccagagatcctggagaccgacctctcgcgcctg
gccctggacctggcccgctggggcgcacgggacgccgacgagctcagcctgctcgaccgg
ccgcccgcggcggccctggccgaggcgcgggccctgctgacccgcctgggcgccctggat
gcggccggcgcgctcacggcccacgggcgagccatgggcgagctgcccttggccccgcgc
ctggcgcacatggtcatggcgggggcggcgaggggcgccggccgccgtgcggcccgcatc
gccgccctgctgaccgagcgcggcctcggcggccgctcggccgacatcgccacgcgcctg
gaaggctttgcgcgcgattccggcccccgggccaagggcgccgccgccctggccgatcgc
tgggcgcggcttgcgggcggcggtgattccaaaggcgaaattgacgacggcctgctggtg
gccgaggcctttcccgagcggatcgccaaggcccgcggcaagcccggcgaataccagctc
gccaacggccgcggcgtgaccctcgatcccgccgattcgctggcccgcgagccctggctg
gcggtggccgaactgggcgccggcgaggcccgcgaccgaatcctgctggccgcccgcctc
gacgagacggcgctgagggtcgcgttcgccgatcggctggtgcgcgaagagcggctggag
gcgtcgccgaacgggcgccttcgagccaaggaaaccctgtggctgggccggctcgcggtc
gaggagcgcctgatcaccgacccggaccccgccctgattcgcgccgccctgctggacgag
gtccgccggcgtgggctcgaggccctgccctggggcgccgccagtcgctccttgcgcgag
cgcgccgccttcgtgcgggccagcgggggcgaggcgcccgacttctcggacgaagcgctg
ctggcggacctcgaggcctggctagggcctttgctggcgggccgcacgtcgctgaacggc
cttgctgattcggacctcctggaagccctgcgcggcctcgcgccctgggatgtcctgcgc
cgcctcgacgcggaggctccggtgcgctggacggccccgaccggaaccacccacgccatt
gattacgccgccgagggtgggcccagggtcgacatccgagtgcaggagctgtttgggctc
aacgtccatcccacagtcggccgcagcgtcccgctgaccctggccctgctttcgccggcc
caccgcccgatccagctgaccaaggacctgccgggcttctggcgcggctcgtggagcgat
gtgcgcaaggacatgcgggggcgctatcccaagcacgtctggcccgaagaccccgccgcc
gcggcgccgaccttgagagctaagccgagggcggggtga
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