Corylus avellana (European hazelnut): 132164070
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Entry
132164070 CDS
T09426
Name
(RefSeq) histone deacetylase 9 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03082
ATP-dependent chromatin remodeling
cave03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132164070
03083 Polycomb repressive complex
132164070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cave03036
]
132164070
Enzymes [BR:
cave01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
132164070
Chromosome and associated proteins [BR:
cave03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
132164070
HDAC complexes
Sin3A-HDAC complex
132164070
BRAF-HDAC complex
132164070
REST complex
132164070
SHIP complex
132164070
MiDAC complex
132164070
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
132164070
Heterochromatin formation proteins
Other heterochromatin formation proteins
132164070
Chromatin remodeling factors
NuRD complex
132164070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
132164070
NCBI-ProteinID:
XP_059430464
LinkDB
All DBs
Position
ca10:complement(5747434..5758556)
Genome browser
AA seq
430 aa
AA seq
DB search
MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHQKMEIYRPHKAYPVEL
AQFHSADYVDFLHRITPNSQHLFSNELAKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDVKEIGEREGKFYAINVPLKDGIDDSSFTRLFKS
IISKVVETYVPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWAVETGVLLDTELPNEIPENEYIKYFGPEYSLRIPNGHIENLNSKSYLSTIK
MQVFENLRSIQHAPGVQMQEVPPDFYVPDFDEDERDPDERMDQQAQDKHIQRDDEYYEGD
HDNDQNMDDV
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcgctccaaggacaggatctcctacttttacgacggggatgtgggtagtgtttatttt
gggccgaaccatccaatgaaaccacaccggctttgtatgacccaccatcttgtcctctcc
tatgagcttcatcagaagatggaaatttatcggcctcacaaagcgtatcctgttgaactt
gctcagttccattcagccgattatgttgactttttacaccggatcacacccaacagtcaa
cacttgttctcaaatgaattggcaaaatataatcttggagaagattgccctgtctttgaa
aatttgtttgagttttgtcaaatttatgctggtggaacgatagatgctgcacgcagattg
aacaatcaactttgtgacattgctatcaactgggctggtgggttacaccatgccaagaag
tgcgaggcatctggcttttgttacatcaatgatttggttttgggaatcttggagcttcta
aaacatcatgcccgtgttttgtatattgatatagacgtgcatcatggcgatggtgtagaa
gaagccttttatttcacagacagggtgatgactgttagttttcacaagtatggggacatg
ttttttccaggaactggtgatgttaaggaaataggagaaagggaagggaagttttatgcc
ataaatgtcccgctcaaggatggaatagatgattccagcttcaccagactttttaagagt
attatttccaaggttgttgaaacatatgtaccaggtgcaatagttctccaatgtggggca
gattcactagctggggaccgcttaggctgcttcaatctctccattgatgggcatgctgaa
tgtgttaggtttgtgaagaagtttaatttgcctttactggtaactggaggtgggggatat
acgaaagagaacgttgctcgatgttgggctgtggaaactggagttcttctggatacagaa
cttcccaatgagatcccagaaaatgagtatatcaaatattttggtccagaatactcgttg
aggattccaaatgggcacatagagaacttaaacagcaaatcgtaccttagcacaatcaaa
atgcaggtcttcgaaaatcttcgcagcatccaacatgctcctggtgtacaaatgcaagag
gttccacccgacttttatgttcctgatttcgatgaagacgagcgagaccccgatgagcgc
atggatcagcaagcccaagacaagcacattcagcgcgacgatgaatattatgaaggagac
catgataatgatcagaatatggacgacgtataa
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