KEGG   Corylus avellana (European hazelnut): 132164070
Entry
132164070         CDS       T09426                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
cave  Corylus avellana (European hazelnut)
Pathway
cave03082  ATP-dependent chromatin remodeling
cave03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cave00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    132164070
   03083 Polycomb repressive complex
    132164070
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cave03036]
    132164070
Enzymes [BR:cave01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     132164070
Chromosome and associated proteins [BR:cave03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     132164070
   HDAC complexes
    Sin3A-HDAC complex
     132164070
    BRAF-HDAC complex
     132164070
    REST complex
     132164070
    SHIP complex
     132164070
    MiDAC complex
     132164070
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     132164070
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    132164070
  Chromatin remodeling factors
   NuRD complex
    132164070
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 132164070
NCBI-ProteinID: XP_059430464
LinkDB
Position
ca10:complement(5747434..5758556)
AA seq 430 aa
MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHQKMEIYRPHKAYPVEL
AQFHSADYVDFLHRITPNSQHLFSNELAKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDVKEIGEREGKFYAINVPLKDGIDDSSFTRLFKS
IISKVVETYVPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWAVETGVLLDTELPNEIPENEYIKYFGPEYSLRIPNGHIENLNSKSYLSTIK
MQVFENLRSIQHAPGVQMQEVPPDFYVPDFDEDERDPDERMDQQAQDKHIQRDDEYYEGD
HDNDQNMDDV
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcgctccaaggacaggatctcctacttttacgacggggatgtgggtagtgtttatttt
gggccgaaccatccaatgaaaccacaccggctttgtatgacccaccatcttgtcctctcc
tatgagcttcatcagaagatggaaatttatcggcctcacaaagcgtatcctgttgaactt
gctcagttccattcagccgattatgttgactttttacaccggatcacacccaacagtcaa
cacttgttctcaaatgaattggcaaaatataatcttggagaagattgccctgtctttgaa
aatttgtttgagttttgtcaaatttatgctggtggaacgatagatgctgcacgcagattg
aacaatcaactttgtgacattgctatcaactgggctggtgggttacaccatgccaagaag
tgcgaggcatctggcttttgttacatcaatgatttggttttgggaatcttggagcttcta
aaacatcatgcccgtgttttgtatattgatatagacgtgcatcatggcgatggtgtagaa
gaagccttttatttcacagacagggtgatgactgttagttttcacaagtatggggacatg
ttttttccaggaactggtgatgttaaggaaataggagaaagggaagggaagttttatgcc
ataaatgtcccgctcaaggatggaatagatgattccagcttcaccagactttttaagagt
attatttccaaggttgttgaaacatatgtaccaggtgcaatagttctccaatgtggggca
gattcactagctggggaccgcttaggctgcttcaatctctccattgatgggcatgctgaa
tgtgttaggtttgtgaagaagtttaatttgcctttactggtaactggaggtgggggatat
acgaaagagaacgttgctcgatgttgggctgtggaaactggagttcttctggatacagaa
cttcccaatgagatcccagaaaatgagtatatcaaatattttggtccagaatactcgttg
aggattccaaatgggcacatagagaacttaaacagcaaatcgtaccttagcacaatcaaa
atgcaggtcttcgaaaatcttcgcagcatccaacatgctcctggtgtacaaatgcaagag
gttccacccgacttttatgttcctgatttcgatgaagacgagcgagaccccgatgagcgc
atggatcagcaagcccaagacaagcacattcagcgcgacgatgaatattatgaaggagac
catgataatgatcagaatatggacgacgtataa

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