Chitinophaga caeni: COR50_04325
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Entry
COR50_04325 CDS
T05360
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cbae
Chitinophaga caeni
Pathway
cbae03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cbae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
COR50_04325 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbae03400
]
COR50_04325 (ligD)
Enzymes [BR:
cbae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
COR50_04325 (ligD)
DNA repair and recombination proteins [BR:
cbae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
COR50_04325 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Flavodoxin_3
Motif
Other DBs
NCBI-ProteinID:
ATL46462
UniProt:
A0A291QRF0
LinkDB
All DBs
Position
complement(1046938..1048872)
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AA seq
644 aa
AA seq
DB search
MKPFYSPMLATLVDKPFDDPGWIFERKWDGYRAIASCHKNICKLYSRNHQSYLPAFDIIA
KAVEKIPHNVVLDGELVVLDKNGHDDFQRMQQYKKSKEGKLVFEVFDLLYLDGYETTALT
LLERKSLLKDLIADLDDPHVQYTDHSRAKGSEFFNKARKRGWEGMIAKEADSFYSEGLRS
KQWLKVKHHKQQEAIIAGYTRPKGSRSKFGALLLGAYNGKKLVFLGHCGGGFDEALLKEI
YGMMQAFKTQNNPFDTEFKPNGEPTWLKPKLVCEVKFAGMTEAGQLRQPIFLGLRTDKAA
KDVTLEVPRKITPKNAAKKVIKNSRGQTEKEEIMSKNTLNKETINMGSKQVPVTHTEKLY
WPKEGITKGDLLQYYESIAPYILPHLKLRPLSLHRFPEGIQKQGFYQKDVDTEHLPPFVK
TVPIYADSAKRDIDYVVCNNGATLIYLTNLGCIDMNPWLSRTRNLDQPDFIVFDLDPGKI
DFEAVVETAICIKEYLESLNITCYCKTSGSTGIHIFVPTGGKLDYDAGRLFAKYVATQVQ
AQLPKITSVTRAVSSRTKKVYIDYLQNSRGQTVASAYSVRPKPGATVSMPLDWTDINAQL
SIRDFDIHNVPGLLESKGDIWEGVLTEKNNFKKAIQLIGELEAK
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgttttatagtcccatgcttgccaccctggtagataagcctttcgatgatccc
ggttggatttttgaacggaaatgggatgggtaccgggcgatcgcttcctgccataaaaat
atttgtaaattatattcacgtaaccaccaatcctatctgcctgcttttgacataattgcc
aaagctgtggagaaaattccacataacgtggtgttagatggtgaattggttgtattggat
aaaaatggacatgatgattttcaaaggatgcagcaatataaaaaaagcaaggaaggcaag
cttgtttttgaagtgttcgatctattatacctggatggttatgagacaacagctttgact
ttattggaaaggaaaagcctgctaaaggacttaatagcggatttggatgatccgcacgtg
caatataccgatcattccagggctaaaggttcggaattttttaacaaggcacggaagcgc
ggatgggaagggatgattgcgaaagaggccgacagtttttactctgaaggattgcgctca
aagcagtggttaaaagtgaaacatcataagcaacaggaagctattatcgcgggttacacg
cgcccgaaaggtagccgttcaaaattcggcgctttattactgggcgcatataatggcaag
aaattggtattcttaggtcattgtggcggtggattcgacgaagctttattgaaagaaata
tacgggatgatgcaagcatttaaaactcaaaataacccctttgataccgagtttaaaccg
aacggggaacccacatggttaaagccgaagctggtttgtgaagtgaaatttgccggtatg
acggaagccgggcaactccggcaacccattttcttaggtttacgaacagataaagcagcc
aaggatgttacccttgaagtgccccgcaaaattaccccgaagaatgccgctaaaaaagtt
attaaaaatagccggggacaaacagaaaaggaggaaattatgtcaaaaaacacgcttaac
aaggaaacgattaatatgggtagtaagcaagttccggtaacacataccgaaaaattgtac
tggccgaaggaaggtatcacgaaaggagatttgttgcaatattatgaatccattgccccg
tatatcttaccacatcttaaattacgccccctttccctgcaccgctttccagaaggtatt
cagaagcagggtttttatcaaaaagatgttgatacggagcacctgcctccgttcgtgaaa
acggtgccaatttatgcggattctgccaagagagatatcgactacgtggtttgtaacaac
ggtgcgaccttgatttacttaactaatctgggttgcatcgatatgaatccttggctgagc
agaacccggaatttagatcagcccgattttatagtttttgatctggatccgggtaagatc
gattttgaagcggttgtggaaacagctatttgtatcaaggaatacttggaatcgttaaat
attacttgctattgtaaaacttccggctctaccgggattcatattttcgtacctacaggt
ggcaaattggattatgatgccggtcgtttgtttgccaaatatgttgctacgcaggtacaa
gcccaattgccgaaaatcaccagcgtaacgagagcggtttcttccaggactaaaaaggtt
tatatagattacctgcaaaatagccgcggtcaaacggtggcttcggcttatagcgttcgt
ccgaaaccaggtgctaccgtttcaatgcctttagattggacagatataaatgcgcagctt
agcatccgggattttgatatccataatgtgcccggtttgctggaatcaaagggcgatatt
tgggaaggcgtactcacggaaaagaacaactttaaaaaggccattcaactgattggagaa
cttgaagctaaatga
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