Cercospora beticola: CB0940_07117
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Entry
CB0940_07117 CDS
T09388
Name
(RefSeq) Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cbet
Cercospora beticola
Pathway
cbet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CB0940_07117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbet03041
]
CB0940_07117
Enzymes [BR:
cbet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CB0940_07117
Spliceosome [BR:
cbet03041
]
Complex C
Other components
Step II factors
CB0940_07117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
S1
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
T2SSE
AAA_30
AAA_19
nSTAND3
SLFN-g3_helicase
AAA_16
Motif
Other DBs
NCBI-GeneID:
35430923
NCBI-ProteinID:
XP_023449777
LinkDB
All DBs
Position
5:1081112..1085308
Genome browser
AA seq
1177 aa
AA seq
DB search
MDDLEQLEILSLVSRITSEINNHMGVSDKTISEFVMAEHAKCANQSAFREKMADFDFPES
LADSIDRLIRTMHPRFKNASHSNGGNDATEKPADKIQKFKGLAIADTAPVVDDLDDTFAA
LESLAGPPKTNGRKRSVSPVRYDDEKPSKRHRRSRSRSREKKRNDEYLFEDEFGRTRAHR
PDRDDRKRHRRDSRERGRRKEPQLDDEPVLFKIYDGRVTGVKDFGVFVNLYGVKGKVDGL
VHISAMSDQKVNHPSDLVERNQEVKVKVMKVQDKRISLSMAEVDQETGEDLAPGRKVQTG
ATGANSMGLGGATNFDSLKSAVPVIETGAAGKRQRKRMTSPERWEIRQLIASGVIKASDY
PDLDEDYNAAMNGEQIEEEEDVDIEVREDEPPFLAGQTKQSLELSPIRVIKAPDGSMNRA
AMQGDVLAKERRDMRQQEAQDKAKAEAAKTDLNQEWNDPMVAPGERRFASDLRQAKTGNG
EVPEWKKIATGRGAEMGKRTNMSIKEQRESLPAYKMRKQFLDAVRQYQLMIVVGDTGSGK
TTQLTQYLAEDGFAHDGMIGCTQPRRVAAMSVAARVADEVGCRLGEEVGYTIRFEDKTNE
NTKIKYMTDGIMQREILLDPELNKYSVIMLDEAHERTIATDVLFGLLKKTLKKRPDMKLI
VTSATLDAEKFSTYFNECPILTIPGRTFPVEIMYSREPESDYLDAALTTVMQIHLTEKPG
DILLFLTGKEEIDTSCEILFERMKALGPSVPELVILPIYGALPSEIASKIFEPPPPGGRK
VVIATNIAETSITIDGIYFVIDPGFVKQTAYDAKLGMDRLQVTPISQAQAKQRAGRAGRT
GPGKCFRLYTESAFQNEMLPTTIPEIQRQNLSNTILMLKAMGINDLLGFDFMDPPPTNTM
LTALEELYALGALDDEGLLTRLGRRMADFPMDPALGKALITSVDLGCSDEMLSIVALISA
VQTVFHRPKEKQQQADQKKARFHDPAGDHLTLLNVYNGWKAAGKSDPWCFENFIQPRNIK
RAEDVRKQLVQILDRHRLKIISCGRDTTRVRQALCAGFFRNSARKDPQEGYKTLVEGTPV
YMHPASALFGKHAEHVIYHSLVETTREYMHNVTAIEPKWLVEAAPTFFKVAGKDGGGLSK
RQRAERIQPLHNKFAGEDDWRLSAQRRQGRGGGGTWG
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggacgatttggagcagttggaaatactctcgctggtgagccgaatcaccagcgagatc
aacaaccacatgggcgtctccgacaaaacgatttccgagttcgtcatggcagagcacgcg
aaatgtgcaaatcagtcggcctttcgagaaaagatggcagacttcgactttcccgaatcg
ctggccgatagcatagatcgcttgatccggaccatgcatccacgcttcaagaacgcatcg
cattccaatggagggaacgatgcgacggagaagcctgcggacaagatccaaaagttcaaa
ggtcttgctatcgccgataccgcgcctgtcgtcgatgacttggacgacacatttgccgct
cttgagtcgctcgcgggcccaccaaagacaaacggccgaaaacgaagcgtgtctccggta
cgatacgatgacgagaagccttcgaaacgccacagacgctcccggtcacggtcgcgagag
aagaagcgcaatgacgaataccttttcgaagacgagttcggccgcacacgagcacatcga
ccagatcgagacgaccgaaagagacatcgacgagattctcgagagcggggcaggaggaaa
gagccgcagcttgacgatgaacctgtgctgttcaagatctacgatggaagagtgacaggt
gtgaaggactttggcgtttttgtcaatctctacggcgtgaaaggcaaggtggatggcttg
gtccatatctctgctatgtcggatcaaaaggtcaatcacccgagtgacttggtagagcgt
aatcaagaggtcaaggtgaaggtcatgaaggtacaggataagcgaatcagtctgagcatg
gcggaggtggatcaggagactggagaagatctcgcgccagggaggaaggtgcagactggc
gcaacaggcgcgaattctatgggtctaggcggagccacgaattttgacagtctcaaatct
gcggtgccggtcattgagactggagcagctggaaagcgacaacgaaaacgaatgacgagc
ccggaacgatgggagatccggcaattgatagcttcaggagtgatcaaggctagtgattat
ccggacctggacgaagactataacgcagccatgaatggcgaacagatagaagaggaggaa
gatgttgatatcgaggttcgtgaggacgagccgcctttcttggccggccaaacgaagcaa
tctctagaattgtctccaattcgtgtcatcaaagctccagacggcagtatgaacagggct
gcgatgcagggagacgtgctcgctaaagagcgacgggatatgagacagcaggaagcacag
gacaaagccaaagcagaagcagcgaagactgatctcaatcaggaatggaatgatcctatg
gtcgcgcctggagagcgtaggttcgctagcgatttacgacaggctaagactggtaacggt
gaagtgccggagtggaagaagatcgccactggtcgaggtgctgagatgggaaagagaacg
aacatgtccatcaaggagcaacgagaatctctgcctgcttacaaaatgcggaagcagttc
ttggacgctgtccggcaatatcagcttatgattgtagtcggagacactgggtctggaaag
acaactcagcttacgcaatacctcgctgaggatggctttgcacacgacggtatgattggt
tgcacgcagcctcgtcgtgtcgcagctatgtctgtcgcagccagagtggcagacgaagta
ggatgcagacttggcgaggaggttggctacacgatccgattcgaggacaagaccaatgag
aacacaaagatcaaatacatgacagacggtatcatgcagcgtgagattctgctggatccg
gaactcaataagtacagcgtgatcatgcttgatgaagctcacgagcgcactatcgccacc
gacgtgctcttcggcctcctcaagaagaccttgaagaagcgcccagacatgaagctcatt
gtcacttctgcgacactggacgctgagaagttctctacatatttcaacgaatgcccgatc
ttgacaattccgggcagaacattcccagtagagatcatgtacagtcgggagccggagagc
gattatctggatgcagctttgacgactgtgatgcagattcatctcactgagaagcctggt
gacatactgttgttcttaactggcaaagaagagatcgacaccagttgcgagatcttgttc
gagcgcatgaaagcacttgggccttctgtgcccgagctcgtcatcctgcccatctacggt
gcattgccatctgagattgcttccaagatctttgagccacctcctcctggtggtaggaag
gtggtcatcgccacgaacattgcagagacaagtatcacaatcgacggcatctatttcgtt
atcgatcctggttttgtgaaacagactgcgtatgatgcgaagcttggaatggaccgtctc
caagtcacacctatctctcaggcccaggctaagcagcgtgctggacgcgcagggcgtaca
ggtcctggaaagtgcttccggctgtacaccgagtctgcgttccagaacgagatgctgcct
acgacgataccagaaattcaacgacagaacctgtccaacacaattctcatgctcaaggcc
atgggaatcaatgatctgcttggattcgacttcatggatccacctcctacgaataccatg
ttaacagctctcgaagagttgtacgcacttggggcgcttgatgacgaaggcctcttgact
cgtctcggccgtcgtatggctgatttcccaatggatccagctcttggaaaagctttgatc
acgtctgttgaccttggctgttccgacgagatgctttccattgtcgcactcatttctgcc
gttcagacagttttccatcgaccaaaagaaaagcagcaacaggcggaccagaagaaagcg
cgctttcacgatccggcaggcgaccatctcaccttgcttaacgtgtacaacggatggaaa
gcagcaggcaagagtgatccgtggtgcttcgagaatttcattcagccgcgtaacatcaaa
cgtgcggaggatgtcagaaagcagctggttcagatcctggaccgtcatcgcctcaagatc
atatcttgcggtcgggataccactcgtgtgaggcaagcactgtgcgccggcttcttccgc
aactccgcacgcaaagatcctcaagaagggtacaagacgcttgtcgaaggcactcctgtc
tatatgcatcctgcaagcgctttgttcggcaagcacgcggagcatgtgatctaccattcg
cttgtggagaccacaagagagtacatgcacaacgtgactgccattgaacccaaatggctc
gttgaagcagctcctacattcttcaaggtcgcaggaaaagatggtggcgggttgagcaag
cgccaacgtgccgagaggatccagccattgcataacaagtttgctggcgaggatgattgg
cggttgagcgcacagagacgacaagggcgaggtggtggtggcacttggggctaa
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integrated database retrieval system
