Candidatus Viadribacter manganicus: ATE48_11010
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Entry
ATE48_11010 CDS
T04422
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cbot
Candidatus Viadribacter manganicus
Pathway
cbot03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cbot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ATE48_11010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbot03400
]
ATE48_11010
Enzymes [BR:
cbot01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
ATE48_11010
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ATE48_11010
DNA repair and recombination proteins [BR:
cbot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ATE48_11010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
IBR
Motif
Other DBs
NCBI-ProteinID:
ANP46408
UniProt:
A0A1B1AIM1
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All DBs
Position
2136619..2137476
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AA seq
285 aa
AA seq
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MPELPEVETVRRGLAPALVGRRIKRARTKRPDLRFPFPARFAARLSGRRVDALERRAKYL
LAHLDDGNVWITHLGMTGRWTILGVKQQPGDFYYAEPTDPAHTHVVIDMEDGAKLEFNDP
RRFGYMDLIPEDELEAHPFFKAMGPEPLGNHFHEPYLKSALAKKKAPIKAALLDQRVVAG
LGNIYVVEALHRAGIAPVKASGSISAQRLDKLFHAIRAVLEEAIEAGGSTLSDYAGVDGA
QGSFQQRFRVYDREGEKCPMKDCGGAIKRAVHSGRSTFWCPKCQR
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagctgcctgaggttgaaaccgtgcggcgcggcttggcgccggctctggtcggg
cggcgcatcaagcgcgcgcgcaccaaacgcccggatctgcggtttccgtttccggcgcgt
ttcgcggcgcgattaagcggacggcgcgtcgatgcactcgagcgccgcgccaaatatctg
ctcgcgcatttggatgacggcaatgtctggatcacgcaccttggcatgacggggcggtgg
acgatcctcggcgtcaagcaacagcccggtgatttctactacgccgaaccgacagacccg
gcgcacacgcatgtcgtgatcgacatggaagacggcgcgaagctagagttcaacgatccg
cgccgcttcggttacatggatcttattccagaagatgagcttgaggcgcacccgttcttc
aaagcgatgggtccagagccgctcggcaatcattttcacgagccgtatctgaaaagcgcg
ctggcaaaaaagaaggcgccaatcaaagccgcgttactggatcagcgtgtcgttgcgggg
ttgggcaacatctacgtggtcgaagctttgcaccgggcagggatcgcgccggtgaaggca
tccggcagtatttcggcgcagcgtttggataagcttttccatgccatccgcgctgtcttg
gaagaagctatcgaggccggtggctcaacgctgagcgactatgctggcgtagatggcgca
cagggcagctttcagcagcgcttccgagtttacgaccgcgaaggcgaaaagtgcccaatg
aaagattgcggcggcgcgatcaagcgcgctgtgcacagcgggcggagcaccttctggtgc
cccaagtgccagcgttag
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