Caenorhabditis briggsae (nematode): CBG_09716
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Entry
CBG_09716 CDS
T01054
Symbol
Cbr-lig-1
Name
(RefSeq) Protein CBR-LIG-1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03030
DNA replication
cbr03410
Base excision repair
cbr03420
Nucleotide excision repair
cbr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBG_09716 (Cbr-lig-1)
03410 Base excision repair
CBG_09716 (Cbr-lig-1)
03420 Nucleotide excision repair
CBG_09716 (Cbr-lig-1)
03430 Mismatch repair
CBG_09716 (Cbr-lig-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbr03032
]
CBG_09716 (Cbr-lig-1)
03400 DNA repair and recombination proteins [BR:
cbr03400
]
CBG_09716 (Cbr-lig-1)
Enzymes [BR:
cbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CBG_09716 (Cbr-lig-1)
6.5.1.6 DNA ligase (ATP or NAD+)
CBG_09716 (Cbr-lig-1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
CBG_09716 (Cbr-lig-1)
DNA replication proteins [BR:
cbr03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
CBG_09716 (Cbr-lig-1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
CBG_09716 (Cbr-lig-1)
DNA repair and recombination proteins [BR:
cbr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
CBG_09716 (Cbr-lig-1)
NER (nucleotide excision repair)
Other NER factors
CBG_09716 (Cbr-lig-1)
MMR (mismatch excision repair)
Other MMR factors
CBG_09716 (Cbr-lig-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
8579191
NCBI-ProteinID:
XP_045093969
LinkDB
All DBs
Position
V:complement(10235415..10238001)
Genome browser
AA seq
797 aa
AA seq
DB search
MFFSKAGKAAVEWAKGTKVPYKDFAQTLEKIEDLSGKKKIDELAQFFTKVLDFSPEDLTA
CVYMSVNQLGPSYEGLELGVAENSLIKAVAKATGRTESKIKEDLRIKGDLGTVAQQSRSN
QKMLAVPKALTVPTVFNKLTEIAKLSGVSAMNKKVDAISALLIACQGIEARFLVRMLAGK
MRIGLGEQSVLSALGHAFTFAKQAESEKKMTGEKLDALKDTNVKRVKTAYCECPNYNRII
EVALSEGIEVLEEKCKLTPGIPLKPMLAHPTKGIDEIMRRFRNQTMTCEWKYDGERGQIH
KREDGQIFIYSRNQENNTSKYPDIIEKISTCIGEGVESFIVDAEVVAIDESGAILPFQVL
TTRKRKNATDDNGVKVGVFLFDLLFFNGESLVRQPLRKRRELLRKNFKKIEGSFYFATSV
DTMDTDEINSFFDEAIQNKCEGLMIKTLDTEATYEISRRSKSWLKMKKDYVDGVGDTLDL
VVMGAYVGNGKRTGVYGGYLLGCYNPTTEEYESVCKIGTGFTDEDLSEQFKILQEKKIDR
APVYYQFDPTLKPDDIFAPHLVFEVKCADITISPRHKAAGGLTEDGKGISLRFPRFLRIR
DDKNPDDATSSEQVLEMYRNQEIFSNQKIEQDDEKDDDDMDGEDEEEEKADLNNTNASEG
SSKENPKVVDEKKDVVKTEKSKEKKSPVKSSPVKQSQAKKSPIKTSSVKTSPAKKEIEKK
KKGPVASIFSSSKKVTKEEVVEVEKVSIKKSKESPSPKKKKRDEFSSNDSDSDEDAFAKK
KQPTKKRSRVVIDSDSE
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgttcttctcaaaagcaggaaaagcggctgtggaatgggcgaaaggaacaaaagttccc
tataaagacttcgcgcaaaccctggaaaaaattgaggatttgtcgggaaagaagaagatt
gatgaactcgcccagttttttactaaagttctcgatttttcaccagaagatctgacagca
tgtgtttacatgtcagttaatcaacttggaccatcctatgagggtttggagctgggtgtt
gccgaaaactcactgatcaaggctgttgctaaagcaaccggtagaactgagagcaagatc
aaagaggatctgcggatcaaaggagatttgggaacagttgcacagcaatcgcgttccaat
caaaagatgcttgccgttccaaaagcattgactgttccgactgttttcaataagcttaca
gaaattgccaaacttagtggagtttcagccatgaacaaaaaagtagatgctatcagtgcg
ttactaatcgcttgtcaaggaatcgaagcacgattcctagttagaatgctcgcaggaaaa
atgaggatagggctcggcgagcaaagtgttctatccgctctcggacatgcattcacattt
gccaagcaagcagaaagtgagaagaaaatgactggagaaaaattagacgcattgaaggac
acgaatgtgaagcgagtgaaaactgcttattgtgagtgccccaattacaaccgtataatc
gaagtggctctgtcagaaggcatagaagttctcgaggagaagtgtaagctgactccggga
attccactgaaaccaatgttagcccatccaacaaagggaatcgatgagatcatgcgtaga
ttccgaaaccaaacgatgacttgtgaatggaagtatgatggtgaacgtggtcaaatacac
aagagagaagatggacagatcttcatctacagtcgtaatcaagagaacaatacttccaaa
tacccagatatcattgagaagatttcaacttgcatcggcgaaggagttgaatcgttcatc
gtagacgcagaagttgtcgcaatcgatgagtctggagcgattctcccattccaagtactg
accacccggaagcgaaagaatgcaacggatgacaatggtgtcaaagtcggtgttttcctt
ttcgatcttctattcttcaatggagagtccctcgtccggcaaccacttcgaaaacgacga
gaattgctacgtaaaaatttcaaaaagattgaaggcagtttctattttgcaacttctgtc
gacaccatggacactgacgaaatcaactcattcttcgacgaggcgattcaaaacaaatgt
gagggtcttatgatcaaaacacttgatactgaagcaacttatgagatttctcgtcgctcg
aaaagttggctgaaaatgaagaaagactacgtcgatggtgtcggagatactttggatctt
gttgtgatgggtgcatacgttggaaacggaaaaagaactggagtatatggaggatatctt
cttggatgctataatccaactacagaagaatatgaaagtgtctgcaagattggaacagga
ttcaccgatgaggatctttcggagcaattcaaaattcttcaagaaaagaaaatcgatcgt
gccccagtgtattatcaattcgacccaactctgaaaccggacgatatttttgctcctcat
cttgttttcgaagttaaatgtgctgacattactatatcgcctcgccacaaagctgctgga
ggtttgactgaagatggcaaaggaatttctttaagattccctcggttccttcgtattcgt
gatgataagaatcctgatgacgcaacatcttctgaacaagttcttgaaatgtaccgtaat
caagagatattctcaaatcagaaaattgagcaagatgatgagaaagatgacgatgatatg
gacggagaagatgaggaggaagaaaaagctgacttgaataatacgaacgcttcggaagga
agttccaaagaaaatccaaaagtagtcgacgaaaagaaggatgttgtaaagacggagaaa
agtaaagagaagaagtctcctgtcaaatcttcgccagtgaagcagtcgcaagcgaaaaaa
tctccgataaagacatcttcagttaagacatctcccgcgaaaaaagaaatagagaagaag
aagaagggaccagttgccagcattttcagctcatcgaagaaagtaaccaaggaagaagtc
gttgaagtcgaaaaagtctccatcaagaagtctaaggaatcgccatcacccaagaagaag
aagagagatgagttctcatcaaacgattcagacagtgacgaggatgcgtttgccaagaag
aaacaaccaacgaagaagaggtcccgtgtggtaatcgactcggactctgaataa
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