Corvus brachyrhynchos (American crow): 103625030
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Entry
103625030 CDS
T08418
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X4
KO
K17890
autophagy-related protein 16-1
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc04136
Autophagy - other
cbrc04140
Autophagy - animal
cbrc04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
103625030 (ATG16L1)
04136 Autophagy - other
103625030 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
103625030 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cbrc04131
]
103625030 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
cbrc03029
]
103625030 (ATG16L1)
Membrane trafficking [BR:
cbrc04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
103625030 (ATG16L1)
Others
Rab GTPases of specific organelles
Auto phagosome
103625030 (ATG16L1)
Mitochondrial biogenesis [BR:
cbrc03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
103625030 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
ATG16
ANAPC4_WD40
NBCH_WD40
eIF2A
Ge1_WD40
CCDC93_CC
Nup160
ZapB
Fez1
WD40_like
HTH_6
Lipoprotein_6
HEF_HK
PALB2_WD40
AP5B1_middle
V_ATPase_I
DUF2332
Phage_GPO
FUSC
YabA
Motif
Other DBs
NCBI-GeneID:
103625030
NCBI-ProteinID:
XP_008642637
LinkDB
All DBs
Position
Unknown
AA seq
561 aa
AA seq
DB search
MQSRHESSPGHDGTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQKDK
EMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKLRK
TTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPDDDIEV
LADETSDTAEETSPVPAVSRTSSKRLSQPAGGLLDSISNIFGLSESPLLGHQSSDTARRR
SVSSFPAPQDNVEPHPGASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMDRRV
KLWEVLGDRCEPKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHTLTG
HSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGH
FDKKIRFWDIRTESIVKELELLGRITALDLNPERTELLTCSRDDLLKIIDLRVSAVKQTF
SAQGFKCGSDWTRVVFSPDGNYVAAGSADGALYVWNVLTGKLERTLAKHHSSSINAVAWS
PAGAHVVSVDKGNKAVLWSEF
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgcagagtagacatgagtccagcccaggacatgatggcacatggaacgatgcacagctg
caggaactggcccagctgaagataaagcaccaagaggagctgactgagctgcacaagaaa
cgtggcgagctggcccagtctgtaattgatctgaacaaccaaatgcagcagaaagacaag
gagatgcagatgaacgaagccaagattgcagagtatttgcaaaagatttctgaactggaa
acagagtgccaggaattgcgtagcaaactgcaagatcttgagcgagctaatcagacactg
aaagatgaatatgatgctctccagatcaccttcaatgccttggaggagaaactaaggaaa
actactgaagacaaccaggagctggtctcacgttggatggcagagaaagcacaagaagcc
aatcgtttgaatgcagaaaatgaaaaggattcaaggagacgccaggccaggctgcagaag
gagctggcagaagctgccaaagagcccttgcctgttgaaccggatgatgatatcgaagtg
cttgcggatgaaacctctgacacagctgaggaaacttctccggtgccagctgtcagccgg
acatccagtaagcgactctcccagccagctggaggccttctggactctatcagtaatatc
tttggtctgtctgagtctccccttttgggacatcagtcttctgatactgccaggaggcgt
tctgtgtcctcattccctgcaccccaggataatgtagagccacatccaggtgccagtaaa
gaagtgagagtgcccactactgccatatgtgtctttgatgcacatgatggggaggtgaat
gcagtgcagttcagccctggctcccggttactagcaacaggaggcatggaccggagggtt
aagctgtgggaagtcttgggagataggtgtgagcccaaaggttccctctctggcagtaat
gctgggattacaagcatagaatttgatagtgctggttcttacctcttagcagcttcaaat
gactttgccagcagaatctggacagttgatgacaatcgattacggcacaccctgacaggt
cacagtggtaaagtcctgtcagccaagttcttgctggacaatgcacgtattgtttcggga
agtcacgaccggaccctcaagctctgggacctccgcagcaaagtttgtataaaaacagtg
tttgcaggatctagctgcaatgacattgtgtgtactgagcagtgtgtaatgagtggacat
tttgataagaaaattcgtttctgggacatcaggactgaaagcatagtgaaagaactggag
ctgcttggaagaatcacagctctggacctgaatccagagcgaacagagcttctgacctgt
tcccgtgatgatctactcaagatcatcgatctgcgggtcagtgctgtcaagcagacgttc
agtgcccagggattcaaatgtggctctgactggacgagagttgtgttcagccctgatggt
aactatgtggctgctggctcagctgatggggccctctacgtttggaatgtgcttactggg
aaattggagaggacgcttgcaaagcatcacagttcttctatcaatgcagtcgcgtggtcg
ccagcgggtgcccacgtggtcagtgtggacaaaggaaacaaggctgtgctgtggtctgag
ttttga
DBGET
integrated database retrieval system
